Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1179 ATGGTGTATAGCATCATAATGTTATGTATTTGGTTCTTCTTATTGTTGGGAACTTCCACTTCACTAGACAGTTTGGCAGTGGGTCAATCCCTCCGAGATGTTGAGAATGAGTCTTTGGTTTCAGCAGGTGGAATTACTGAACTGGGTTTCTTTAGTCTTGGCGATTTATCAAGACGATATTTGGGTGTGTGGTTCAGAAATATAAACCCTAGTACAAAGGTATGGGTGGCTAACCGAAATACACCTCTCAAGAAAAACTCAGGAGTTCTGAAACTCAATGAAAGAGGGGTTCTTGAGCTTCTCAATGATAAAAACAGCACCATTTGGTCATCCAATATATCAAGCATAGCACTGAATAATCCAATTGCTCATCTTTTGGATTCAGGAAATTTTGTAGTGAAATATGGACAGGAAACAAACGATGACAGCCTCTTGTGGCAGAGTTTTGATTATCCAGGTAACATATTGTTGCCAGGAATGAAACTTGGATGGAACTTGGAGACTGGTCTAGAAAGATTTCTATCATCTTGGACAAGTTCTAACGATCCTGCTGAGGGAGACTACGCTGCAAAAATTGATCTTAGAGGATATCCTCAAATAATTAAGTTCCAGCGATCCATTGTGGTATCAAGAGGAGGATCATGGAACGGCATGTCTACATTTGGTAACCCGGGTCCAACTAGTGAAGCATCACAAAAACTTGTGTTAAATGAAAAAGAGGTGTATTATGAGTACGAGCTTCTTGATAGGTCGGTCTTCACAATATTGAAACTGACCCATTCAGGCAATTCGATGACTTTGGTTTGGACAACTCAAAGCAGCACCCAGCAGGTAGTCTCAACTGGGGAGATAGATCCATGCGAGAATTATGCCTTTTGTGGTGTAAATTCTATATGCAATTATGATGGAAACGTTACAATATGTAAATGCTCGAGAGGATATGTTCCCAGTTCTCCTGATCGATGGAATATAGGAGTTTCATCTGACGGTTGTGTTCCAAAGAATAAATCTAATGACAGCAACAGTTATGGAGATAGCTTCTTCAAGTATACAAACTTGAAATTGCCAGACACCAAAACATCATGGTTTAATAAGACGATGGACCTTGATGAATGTCAGAAGTCATGCCTTAAAAATAGGTCTTGTACAGCATATGCAAATTTAGATATCCGTGATGGAGGAAGTGGCTGTCTACTTTGGTTTCATGGTCTATTTGATATGAGGAAATACTCTCAAGGGGGACAAGACTTGTACGTTAGAGTCCCTGCTTCAGAATTAGATCATGTTGGCCATGGAAACATGAAGAAAAAGATAGTAGGAATCATTGTTGGTGTGACTACTTTTGGATTAATCATTACATGTGTATGCATATTGATAATTAAAAATCCTGGGTCTGCAAGAAAATTTTACAGCAACAATTACAAAAACATACAGAGAAAGGAAGATGTTGATTTGCCAGTTTTCAGTTTGTCAGTTTTAGCTAATGTCACCGAAAACTTCTCAACCAAAAACAAGCTTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAACCATGATAGATGGGAAAGTGTTAGCTGTGAAAAGGCTTTCAAAGAAGTCTGGACAAGGGTTGGAAGAGTTCAAGAATGAAGTGACATTGATTTCCAAACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGCTGCATTGAAGGAGAAGAAAAAATGTTGATTTATGAATACATGCCCAACCACAGCTTGGACTACTTTGTTTTCGATGAAACGAAAAGGAAGTTGCTAGATTGGCATAAGCGTTTCAATGTTATTACTGGCATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGGCTGAGAATTATTCATAGAGATCTTAAAACTAGTAATATTTTACTGGATGCAAATTTGGATCCCAAAATATCAGACTTTGGGTTGGCGCGATCATTTTTGGGAGATCAAGTTGAGGCAAACACAAATAGGGTGGCTGGAACATATGGTTACATGCCTCCTGAGTATGCTGCACGGGGGCATTTCTCAGTTAAATCGGATGTCTTTAGTTACGGCGTGATAGTACTAGAGATTGTAAGTGGGAAGAAAAACAGGGATTTTTCGGACCCAGAACACTACAATAATCTACTTGGACATGCGTGGAGGTTATGGACTGAAGAGAGGGCATTGGAACTATTGGATAAACTGTCAGGAGAATGCTCGCCCTCTGAAGTCGTACGATGCATACAAGTAGGCCTATTATGTGTGCAACAAAGACCACAAGATAGGCCACACATGTCATCAGTGGTATTAATGTTGAATGGTGACAAATTACTGCCAAAGCCAAAGGTTCCTGGATTTTACACTGGAACAGATGTTACATCTGAAGCGTTGGGAAATCACAGACTGTGCTCAGTTAACGAACTTTCCATCACAATGTTAGATGCAAGATAA 2445 0.3967 MVYSIIMLCIWFFLLLGTSTSLDSLAVGQSLRDVENESLVSAGGITELGFFSLGDLSRRYLGVWFRNINPSTKVWVANRNTPLKKNSGVLKLNERGVLELLNDKNSTIWSSNISSIALNNPIAHLLDSGNFVVKYGQETNDDSLLWQSFDYPGNILLPGMKLGWNLETGLERFLSSWTSSNDPAEGDYAAKIDLRGYPQIIKFQRSIVVSRGGSWNGMSTFGNPGPTSEASQKLVLNEKEVYYEYELLDRSVFTILKLTHSGNSMTLVWTTQSSTQQVVSTGEIDPCENYAFCGVNSICNYDGNVTICKCSRGYVPSSPDRWNIGVSSDGCVPKNKSNDSNSYGDSFFKYTNLKLPDTKTSWFNKTMDLDECQKSCLKNRSCTAYANLDIRDGGSGCLLWFHGLFDMRKYSQGGQDLYVRVPASELDHVGHGNMKKKIVGIIVGVTTFGLIITCVCILIIKNPGSARKFYSNNYKNIQRKEDVDLPVFSLSVLANVTENFSTKNKLGEGGFGPVYKGTMIDGKVLAVKRLSKKSGQGLEEFKNEVTLISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNHSLDYFVFDETKRKLLDWHKRFNVITGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLDPKISDFGLARSFLGDQVEANTNRVAGTYGYMPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNRDFSDPEHYNNLLGHAWRLWTEERALELLDKLSGECSPSEVVRCIQVGLLCVQQRPQDRPHMSSVVLMLNGDKLLPKPKVPGFYTGTDVTSEALGNHRLCSVNELSITMLDAR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1179 814 ProSiteProfiles PAN/Apple domain profile. 331 422 IPR003609 -
Gso12g1179 814 CDD STKc_IRAK 506 772 - -
Gso12g1179 814 SMART blect_4 30 152 IPR001480 -
Gso12g1179 814 ProSiteProfiles Protein kinase domain profile. 500 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1179 814 SMART ntp_6 342 421 IPR003609 -
Gso12g1179 814 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gso12g1179 814 Gene3D Phosphorylase Kinase; domain 1 463 575 - -
Gso12g1179 814 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 17 812 - -
Gso12g1179 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Gso12g1179 814 SMART serkin_6 500 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1179 814 Pfam S-locus glycoprotein domain 211 317 IPR000858 GO:0048544
Gso12g1179 814 Gene3D Hepatocyte Growth Factor 340 419 - -
Gso12g1179 814 ProSiteProfiles EGF-like domain profile. 283 320 IPR000742 -
Gso12g1179 814 Pfam PAN-like domain 343 407 IPR003609 -
Gso12g1179 814 CDD B_lectin 36 152 IPR001480 -
Gso12g1179 814 Pfam Domain of unknown function (DUF3403) 776 814 IPR021820 GO:0004674
Gso12g1179 814 CDD PAN_AP_plant 339 422 - -
Gso12g1179 814 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gso12g1179 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Gso12g1179 814 Gene3D - 18 149 IPR036426 -
Gso12g1179 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gso12g1179 814 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 812 - -
Gso12g1179 814 Gene3D Transferase(Phosphotransferase) domain 1 576 776 - -
Gso12g1179 814 SUPERFAMILY Protein kinase-like (PK-like) 484 770 IPR011009 -
Gso12g1179 814 Pfam Protein tyrosine and serine/threonine kinase 502 768 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1179 Gso-Chr12 18578853 18582433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1179 488 814 Receptor kinase-like Gene Family AT4G11530 55.786 2.04e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1179 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1179 - - gmx:100819141 1630.92