Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1176 ATGGCCATGCTTACTATTTTCCTTCTTGTCAGCAAGCTAATTTTTTTCTTCTCTAAATTTGCAGCCGCAACAGATACCATTAACCAGTTTGAGTCACTTGAAGATAACACGACCTTGGTTTCAAATGATGGAACCTTTGAGTTGGGTTTCTTCATCCCAGGCAGTACGTCCCCAAACCGCTATCTCGGAATCTGGTACAAAAACATACCAATCAGAACCGTGGTTTGGGTTGCCAACCGTGAAACTCCAATTAAAGACAACTCCAGCAAGTTAAACATAACCCCAGAGGGCAGCCTTGTACTTCTCAATCAGAACAAGACCGTTATTTGGTCAGCAAACCCTACAACAAAAGGTGTCGTTGTGGTGGCACAACTGTTAGACTCAGGCAACTTGGTCCTAAGAGACGAGAAAGACACGAATCCTGAAAACTACTTGTGGCAGAGCTTTGACAACCCCACAGACACGTTTCTACCCGGAATGAAATTGGGATGGGACTTGAAGAAAGGCCTCAATACGGTCCTAACCGCTTGGAAAAACTGGGATGACCCTTCTCCAGGGGACTTCACAGACATTACTTTACGTACCAATTATCCTGAAGAGGTTATGTGGAAGGGCACAACAAAGTACTGGAGAAGTGGCCCGTGGGATGGGACCAAATTTAGCGGTAACCCCTCTGTCCCATCCAATGCAATAGTAAATTACACGATTGTGTCAAACAAGGATGAATTTTATGCTACATATAGCATGACTGATAAGTCAATAATTTCAAGAATCGTGATGAATCAATCACTTTATGTTCGTCAGCGTCTAACATGGAATACAGATAGTCAAACTTGGAGGGTGTCTTCGGAGTTGCCGGGTGATTTATGCGACCACTATAACACTTGTGGCGCATTTGGGATTTGTGTCGCTGGTCAGGCACCTGTGTGCAAGTGTTTAGATGGATTCAAGCCAAAATCACCTCGGAATTGGAACCAAATGAACTGGAATCAAGGGTGCGTCCACAACCAAACTTGGAGCTGCAGGGAAAAGAACAAGGATGGTTTTACAAAATTCAGCAACGTGAAGGCGCCAGACACTGAAAGATCGTGGGTTAATGCAAGCATGACACTTGGGGAATGCAGGGTCAAATGTTGGGAAAATTGTTCCTGCATGGCTTATGCAAATTCAAATATCAGGGGAGAAGGTAGTGGTTGTGCCATTTGGATTGGAGATCTCTTAGATATAAGACTGATGCCAAATGCTGGACAAGATCTGTATATTAGATTGGCGGTGTCTGAAACAGAGATCATCACTGGCATCGAAGCAAAGAGCAACGAAAGCCAACAAGAAGACTTTGAGCTACCTTTATTTGACCTTGTCTTAATAGCACAGGCCACAGATCACTTCTCAGATCACAAGAAGCTTGGCGAAGGTGGTTTTGGGCCCGTATACAAGGGAACATTACCAGATGGACAAGAGGTCGCGGTTAAGAGACTTTCACAAACATCTAGACAAGGATTAAAAGAATTTAAGAATGAGGTTATGTTATGTGCTGAACTCCAACATCGAAATCTTGTTAAAGTTCTTGGATGTTGCTTTCAAGATGATGAGAAATTGCTCATATACGAATATATGTCCAACAAAAGCTTAGACGTCTTTCTTTTTGACTCTAGTCGAAGTAAACTTCTTGACTGGCCTAAGCGTTTCTGCATTATAAATGGAATAGCTCGAGGACTACTTTATCTTCATCAAGACTCAAGACTAAGGATCATACACAGAGATCTTAAAGCAAGTAATGTTTTACTAGATAATGAAATGAATCCAAAAATTTCAGATTTTGGATTGGCTCGAATGTGTGGAGGTGATCAAATTGAAGGGGAAACAAGCAGAATAGTTGGTACATATGGTTATATGGCACCTGAATATGCCTTTGATGGATTATTTTCCATTAAATCGGATGTGTTTAGTTTCGGCGTATTATTGCTAGAGATAGTAAGTGGCAAGAAAAATAGCAGACTCTTCTATCCAAATGACTACAATAATCTCATTGGGCATGCATGGAGGTTGTGGAAAGAGGGAAATCCAATGCAATTCATTGACAGTAGTTTGGAGGACTCATGCATTCTATATGAGGCCTTGCGTTGCATTCATATTGGTCTTTTATGTGTGCAACATCATCCTAATGATAGGCCAAACATGGCCTCTGTGGTCGTATTATTGAGCAACGAGAATGCATTGCCTCTACCAAAGGATCCTAGCTACTTAAGCAAAGACATTTCAACAGAAAGAGAATCTTCTTCTGAGAACTTTACATCTGTTTCTATTAACGATGTCACTATCTCAATGTTGAGTGATAGATAG 2343 0.4153 MAMLTIFLLVSKLIFFFSKFAAATDTINQFESLEDNTTLVSNDGTFELGFFIPGSTSPNRYLGIWYKNIPIRTVVWVANRETPIKDNSSKLNITPEGSLVLLNQNKTVIWSANPTTKGVVVVAQLLDSGNLVLRDEKDTNPENYLWQSFDNPTDTFLPGMKLGWDLKKGLNTVLTAWKNWDDPSPGDFTDITLRTNYPEEVMWKGTTKYWRSGPWDGTKFSGNPSVPSNAIVNYTIVSNKDEFYATYSMTDKSIISRIVMNQSLYVRQRLTWNTDSQTWRVSSELPGDLCDHYNTCGAFGICVAGQAPVCKCLDGFKPKSPRNWNQMNWNQGCVHNQTWSCREKNKDGFTKFSNVKAPDTERSWVNASMTLGECRVKCWENCSCMAYANSNIRGEGSGCAIWIGDLLDIRLMPNAGQDLYIRLAVSETEIITGIEAKSNESQQEDFELPLFDLVLIAQATDHFSDHKKLGEGGFGPVYKGTLPDGQEVAVKRLSQTSRQGLKEFKNEVMLCAELQHRNLVKVLGCCFQDDEKLLIYEYMSNKSLDVFLFDSSRSKLLDWPKRFCIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDNEMNPKISDFGLARMCGGDQIEGETSRIVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIVSGKKNSRLFYPNDYNNLIGHAWRLWKEGNPMQFIDSSLEDSCILYEALRCIHIGLLCVQHHPNDRPNMASVVVLLSNENALPLPKDPSYLSKDISTERESSSENFTSVSINDVTISMLSDR* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1176 780 CDD B_lectin 31 152 IPR001480 -
Gso12g1176 780 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Gso12g1176 780 CDD PAN_AP_plant 340 424 - -
Gso12g1176 780 Gene3D Transferase(Phosphotransferase) domain 1 539 741 - -
Gso12g1176 780 SMART serkin_6 463 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1176 780 Gene3D - 18 149 IPR036426 -
Gso12g1176 780 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Gso12g1176 780 PIRSF SRK 428 780 IPR024171 GO:0004674
Gso12g1176 780 PIRSF SRK 1 443 IPR024171 GO:0004674
Gso12g1176 780 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 773 - -
Gso12g1176 780 CDD STKc_IRAK 469 731 - -
Gso12g1176 780 Gene3D Phosphorylase Kinase; domain 1 426 538 - -
Gso12g1176 780 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Gso12g1176 780 SMART blect_4 30 152 IPR001480 -
Gso12g1176 780 Pfam PAN-like domain 341 409 IPR003609 -
Gso12g1176 780 SMART ntp_6 344 423 IPR003609 -
Gso12g1176 780 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1176 780 Pfam Protein tyrosine and serine/threonine kinase 466 732 IPR001245 GO:0004672|GO:0006468
Gso12g1176 780 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gso12g1176 780 Pfam D-mannose binding lectin 73 178 IPR001480 -
Gso12g1176 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Gso12g1176 780 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 773 - -
Gso12g1176 780 SUPERFAMILY Protein kinase-like (PK-like) 446 748 IPR011009 -
Gso12g1176 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1176 Gso-Chr12 18292407 18295855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1176 433 780 Receptor kinase-like Gene Family AT4G23150 52.825 5.49e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1176 PK_Tyr_Ser-Thr 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1176 - - gmx:100786696 1591.63