Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1174 ATGGATATTCTTTCTTCATTGATCTTTGTTGCAAGTATACTTATCCCTTGTTTCAAATTCTGCATAGCAGCTGATACCATTCTTCTGTCCCAATCCATTAGTGATGGCATGACCTTGGTTTCTCGAGGTGAAACATTTGAACTTGGTTTCTTCAGTCCCAAGAACTCCAACAAACGTTATCTCGGAATTTGGTACAAGAATATCCCCCAGACAGTTGTTTGGGTTTCGAACAGGGCCATCAATGATTCCTCAGGCATCTTAACAGTGAACAGTACAGGAAACCTTGTCCTCAGACAGCATGACAAGGTTGTCTGGTACACAACATCTGAGAAACAAGCACAGAATCCAGTGGCGCAGCTTCTAGATTCAGGGAATCTTGTTGTAAGAGATGAGAGTGAAGCAGACTCAGAAGGATATTTATGGCAAAGCTTTGACTACCCTTCAGATACAATACTTCCAGGCATGAAGTTGGGATTGAACCTCAGAACTGGTATTGAATGGAGAATGACATCTTGGAAGAATCCCAATGATCCATCCCCAGGAGACTTTTATTGGGGCCTTTTGCTTTATAATTATCCTGAGTTTTATCTGATGATGGGAACAGAAAAGTTTGTGAGAGTTGGACCATGGAATGGCCTGCATTTCAGTGGCATACCAGATCAAAAGCCTAACCCGATTTATGCTTTCAACTACATATCCAACAAGGATGAGAAGTACTACACTTATAGCCTACAGAATGCTGCTGTGATCTCAAGATTGGTAATGAATCAAACCTCTTCAATGAGTATTAGATACGTATGGATGGAAAACGAACAATATTGGAAGGTCTATAAATCGCTGCCAAAAGACAACTGTGACTATTATGGCACATGTGGAGCCTATGGGACTTGCTTGATTACAGGCTCCCAAATATGCCAGTGCTTAGCAGGGTTCAGTCCCAAGTCACCACAAGCATGGAACTCATCTGACTGGACTCAAGGATGCACACGGAATCAGCCATTAAATTGCACTAACAAGCTCAATGATGGATTTATGAAAGTGGAAGGTGTGAAAGTGCCAGATACTACACATACTTGGTTAGATGAGACAATAGGTCTTGGAGAGTGCAGAATGAAGTGCTTGAATAATTGTTCTTGTATGGCATATACTAATTCAGACATAAGAGGTGAAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGATATTAGGCAGTTTGAAAATGATGGGCAGGATCTGTATATTCGAATGGATTCTTCAGAATTAGAGTATTCAGATATTGTACGTGATCAAAATAGGGGAGGAAGTGAAGAAAATATCGATCTCCCCTTACTTGACCTTTCAACAATAGTCATTGCCACTGATAACTTCTCAATAAACAACAAGATTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAAGATTAGTAAGTGGACAAGAAATTGCTGTGAAGAGGCTCTCAAGAGGCTCGGGACAAGGAATGACAGAGTTCAAGAATGAAGTCAAACTGATTGCTAAACTTCAGCACCGAAATCTTGTTAAGCTTCTTGGTTGTTGCGTTCAAGAACAAGACAGAATGCTGGTTTATGAGTACATGACTAATCGTAGCTTGGATTGGTTGATTTTTGATGATACTAAAAGCAAACTGCTAGATTGGCCTAAGCGTTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGACCTCAAAGCAAGTAATGTTTTGCTCGATGACCAGATGATCCCTAAAATATCAGATTTTGGCATTGCTAGAATATTTGGAGGAGAGCAGACAGAAGGAAATACAAATCGAGTTGTTGGAACTTACGGCTACATGGCACCAGAATATGCAGCTGATGGTATTTTTTCTGTGAAAACTGACGTTTTCAGTTTTGGTATTTTGTTGCTGGAGATTTTAAGTGGAAAGAGAAACAGAGGATTTTATCTTGAAAACCAATCTGCAAACCTTGTCACTCATGCATGGAATCTGTGGAAAGGGGGCAGGGCTATAGAAATGGTTGACTCAAACATAGAGGACTCTTGTGTTCTATCAGAGGTATTGCGTTGCATCCATGTCTGTCTCTTGTGTGTTCAGCAACACGCAGAGGATAGGCCTCTTATGCCTTCCGTGGTTCTAATGTTGGGGAGTGAAAGTGAATTGGCTGAGCCAAAAGAACCTGGTTTCTACATAAAGAATGATGAAGGTGAAAAAATTTCCATCTCAGGTCAAAGTGATTTATTTTCAACCAATGAAATAACTATCACACTATTAGAAGCCAGATGA 2328 0.4034 MDILSSLIFVASILIPCFKFCIAADTILLSQSISDGMTLVSRGETFELGFFSPKNSNKRYLGIWYKNIPQTVVWVSNRAINDSSGILTVNSTGNLVLRQHDKVVWYTTSEKQAQNPVAQLLDSGNLVVRDESEADSEGYLWQSFDYPSDTILPGMKLGLNLRTGIEWRMTSWKNPNDPSPGDFYWGLLLYNYPEFYLMMGTEKFVRVGPWNGLHFSGIPDQKPNPIYAFNYISNKDEKYYTYSLQNAAVISRLVMNQTSSMSIRYVWMENEQYWKVYKSLPKDNCDYYGTCGAYGTCLITGSQICQCLAGFSPKSPQAWNSSDWTQGCTRNQPLNCTNKLNDGFMKVEGVKVPDTTHTWLDETIGLGECRMKCLNNCSCMAYTNSDIRGEGSGCVMWFGDLIDIRQFENDGQDLYIRMDSSELEYSDIVRDQNRGGSEENIDLPLLDLSTIVIATDNFSINNKIGEGGFGPVYKGRLVSGQEIAVKRLSRGSGQGMTEFKNEVKLIAKLQHRNLVKLLGCCVQEQDRMLVYEYMTNRSLDWLIFDDTKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDDQMIPKISDFGIARIFGGEQTEGNTNRVVGTYGYMAPEYAADGIFSVKTDVFSFGILLLEILSGKRNRGFYLENQSANLVTHAWNLWKGGRAIEMVDSNIEDSCVLSEVLRCIHVCLLCVQQHAEDRPLMPSVVLMLGSESELAEPKEPGFYIKNDEGEKISISGQSDLFSTNEITITLLEAR* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1174 775 CDD PAN_AP_plant 332 417 - -
Gso12g1174 775 SUPERFAMILY Protein kinase-like (PK-like) 442 729 IPR011009 -
Gso12g1174 775 CDD B_lectin 30 147 IPR001480 -
Gso12g1174 775 ProSiteProfiles EGF-like domain profile. 281 317 IPR000742 -
Gso12g1174 775 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 178 IPR036426 -
Gso12g1174 775 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 424 - -
Gso12g1174 775 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 433 774 - -
Gso12g1174 775 Pfam D-mannose binding lectin 71 173 IPR001480 -
Gso12g1174 775 Pfam Domain of unknown function (DUF3403) 732 775 IPR021820 GO:0004674
Gso12g1174 775 PIRSF SRK 424 775 IPR024171 GO:0004674
Gso12g1174 775 PIRSF SRK 1 440 IPR024171 GO:0004674
Gso12g1174 775 SMART serkin_6 458 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1174 775 Gene3D Transferase(Phosphotransferase) domain 1 534 742 - -
Gso12g1174 775 Pfam PAN-like domain 336 404 IPR003609 -
Gso12g1174 775 ProSiteProfiles Protein kinase domain profile. 458 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1174 775 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Gso12g1174 775 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Gso12g1174 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Gso12g1174 775 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 32 424 - -
Gso12g1174 775 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 433 774 - -
Gso12g1174 775 Gene3D Hepatocyte Growth Factor 335 417 - -
Gso12g1174 775 Gene3D - 20 144 IPR036426 -
Gso12g1174 775 Pfam Protein tyrosine and serine/threonine kinase 459 725 IPR001245 GO:0004672|GO:0006468
Gso12g1174 775 SMART blect_4 30 147 IPR001480 -
Gso12g1174 775 SMART ntp_6 339 418 IPR003609 -
Gso12g1174 775 ProSiteProfiles Bulb-type lectin domain profile. 24 141 IPR001480 -
Gso12g1174 775 CDD STKc_IRAK 464 729 - -
Gso12g1174 775 Gene3D Phosphorylase Kinase; domain 1 426 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1174 Gso-Chr12 18186975 18191237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1174 446 747 Receptor kinase-like Gene Family AT4G23230 60.066 4.99e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1174 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1174 - - gmx:100775648 1573.53