Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1171 ATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAAACAGCAAGAAGCGTGAGATTTGAGAGTAGAGAATCACAATCTTCTTCTGGCCTCACCAACAACATTGGAAGCTATGCAGCTTCTTGGCAACAACATCAACAACATGACATGGCAACAAGGTCTTCTTCCATGGATAACAACTCTGTCTCAGGTGGTTCCTCTGTGGTCTTCCATGACCAGAAGCAGCTTCAAGTTCATGATTCATCACCAGCAGCCACTTCCACCAATGACCCCAACTTTCACATGATGGCCTTGGGCCTCTCATCTCAAGCCATGGACTGGAGTCAAGCATCTTTGCCGCTGCGAGGTGAGAAGGGTTCAGAGAACAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCGGGCACAAATTTTCAGCAGCAAGAATGTGGGAGCAACAGTATAGGCTTGTCTCAACACCACCATCACCATCATCAACAAGTTCATTGGAAACCAGAAAAGTTGTTCTCAGCTGAGTCATCAAGCAACGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTTTCTCCTCAATACAGCTCCGGGGACAGCACTGTCACAAGCCAAGGCTTGCCTTGTTCTTTTCAGATAGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGTCTTTTGGGACAAGAGAGCAACAACAACCAACAACAACCCCACCAAGGTGGTGGTGCCATGAATTTTCCTTACTCAGCAGCAAGCTATGGATTGAACTCGAATATTGAGTTGGTGCCTTCTTGGTCTAAAGTTCCTCAGTTTCTGAGAGCTTCTCCGCCAAAACAACCCCCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGAGCCTGCTATTAAGGATTCTCGATCCAACTTTATCCCCTCTTTGCAACCTCCCTTCCCCACATCAAATTTCGATGTACAATCGAAGAATATATCTGAAGTTAGAGATTCGGGTGGTGTGGTGAAGAAAAGTGGGAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCGTATATGAAAAGTGGTGCTCCAATACAACATCAGCAGAGTTCTGGAAAATCTAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTCGGAGGAACTTACAGATAG 1425 0.4589 MSDDQFQASGNWWETARSVRFESRESQSSSGLTNNIGSYAASWQQHQQHDMATRSSSMDNNSVSGGSSVVFHDQKQLQVHDSSPAATSTNDPNFHMMALGLSSQAMDWSQASLPLRGEKGSENSFRSMLQENLSSSGTNFQQQECGSNSIGLSQHHHHHHQQVHWKPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCSFQIDYVGNPSSILQGLLGQESNNNQQQPHQGGGAMNFPYSAASYGLNSNIELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNANSEPAIKDSRSNFIPSLQPPFPTSNFDVQSKNISEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1171 474 MobiDBLite consensus disorder prediction 42 68 - -
Gso12g1171 474 Gene3D - 364 426 IPR036638 GO:0046983
Gso12g1171 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 421 IPR036638 GO:0046983
Gso12g1171 474 MobiDBLite consensus disorder prediction 335 362 - -
Gso12g1171 474 CDD bHLH_AtbHLH_like 360 411 IPR045239 -
Gso12g1171 474 SMART finulus 365 409 IPR011598 GO:0046983
Gso12g1171 474 MobiDBLite consensus disorder prediction 418 442 - -
Gso12g1171 474 MobiDBLite consensus disorder prediction 132 152 - -
Gso12g1171 474 MobiDBLite consensus disorder prediction 132 166 - -
Gso12g1171 474 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 463 - -
Gso12g1171 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
Gso12g1171 474 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1171 Gso-Chr12 18045364 18049845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1171 116 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.076 2.11e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1171 - - gmx:100818424 922.924