Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1164 ATGAAATTTCTTTCTTTCATGATTATGGTTGCTTACATACTTGTTTCCTCTCTCAGAATTTCCATAGCAAATGATTCCATGAACGTCCTCCAGTCTATGAGTGACGGGGTGAGCTTGGTGTCAAAAGGTGGAAAGTTCGAATTTGGTTTTTTCAGTCCAGGTTATTCCCAGAAACGTTATGTGGGTATTTGGTACAAGAACATCCCAATCCAGACAGTTGTTTGGGTTGCTAATAAGGCCAACCCCATCAATGATTCCTCAGGTATCATAACACTCAACAGCACAGGCAATCTTGTTCTCACCCAAAATGCGTATCTTGTCTGGTACACCAACAACTCTCACAAACAAGCACAGAATCCTGTAGTAGTGCTTTTGGACAGTGGCAATCTTGTGATAAAAAACGAGGAAGAAACAGACCCAGAAGTGTGTTTGTGGCAAAGCTTTGACTATCCATCTGATACACTCTTGCCAGGGATGAAGTTGGGACGGAACATCCGAACTGGTCATGAGTGGAAACTAACTTCTTGGGAGAATCCAAATGATCCATCCCCTGGAGACATTTATCGGGTTTTAGAACTCTATAACTATCCTGAGCTTTATGTAATGAAAGGAAAGAAAAAGGTATACCGGTCTGGACCTTGGAATGGCCTATATTTCAGTGGATTACCTTATCTACAGAATAATACTATTTTTGGTTACAACTTTGTAAGCAATAAAGATGAGATTTACTTCACGTTTAGCCTTCTAAATAATTTTGTCATTGAAAGAACTGTAGTAAACCAAACAGGTATAGTTTATCGCTATGTATGGTTGGAGGGTGATCATAATTGGACGATGCATAGATCCTACCCGAAAGAGTTTTGTGACAATTATGGTCTCTGTGGAGCCTATGGGAATTGCATTATTAATCAGACACAAGGATGCCAGTGTTTGAAAGGGTTTAGTCCAAAGTCACCACAAGCATGGGCTTCATCTGATTGGAGTCAAGGATGTGTCCGCAATAAACCGTTAAGTTGCAACGGCGAACATAAAGATGGGTTTGTCAAATTTGAAGGCCTTAAAGTTCCTGATACTACACAGACTTGGTTGGATAAGACTATTGGTCTGGAGGAATGCAGAGTGAAGTGCTTGAATAATTGTTCTTGTATGGCCTACAGTAATTCAGACATAAGAGGTGCAGGTAGTGGTTGTGTCATGTGGTATGGAGATCTCATTGACATGAGACAATTTGAAACGGGTGGGCAAGGTCTACATATCAGGATGTCTGCTTCAGAGTCAGAACCTGAAGATGGGCACGAGAGGAACACACCAACGATTGTTGCTTCCACCATTGCTGCAATTTGTGGGGCTCTGTTGATTAGTTCTTATTTTATCTGCAGAAATAGGAGGAACAATGCTGTAACAAATTACTCGAAGGACAAGAGTGAGAAGGATATTGATTTACCAACATTTGATTTTTCATTCATTTCTAATGCCACAAATGACTTTTCGCAAAGTGAAAAATTGGGACAAGGCGGCTTTGGATCCGTGTACAAGGGCATATTGCCAGATGGGCAAGAGATTGCAGTCAAAAGGCTTTCTAAAACTTCTGGACAAGGTTTGGATGAATTCAAAAATGAAGTCATGTTGATTGCAAAACTTCAACACCGCAATCTCGTAAAGCTTCTTGGTTGTTCTATCCAACAAGATGAGAAATTGTTGATATATGAATTCATGCCAAATAGAAGCTTGGATTACTTTATTTTTGATTCAACAAGGCACACATTATTAGGTTGGACTAAGCGATTTGAAATTATTGGTGGAATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGACTAAAGATCATTCACAGGGATCTCAAAACTAGTAACGTTCTTCTTGATAGTAATATGAACCCAAAAATATCAGATTTTGGTATGGCTAGGACATTTGGGTTAGATCAAGATGAAGCAAATACAAATAGAGTAATGGGAACATATGGTTATATGCCTCCTGAATATGTAGTACATGGATCTTTCTCAGTCAAATCTGATGTTTTCAGCTTTGGTGTGATTGTGCTAGAGATAATCAGTGGGAAGAAGAATAGGGCGTTTTATGACCCACACCATCACCTAAATCTTCTTGGGCATGCATGGAGACTGTGGATTGAAAAGAGGCCAACAGAACTTATGGATGACTTGGTCGATAATTCAGCTTGTCCATCTGAAATAATAAGATATATTCATATTGGTTTGTTATGTGTACAACAAAGACCTGAGGATAGACCAAACATGTCATCAGTAACTTTATTCTTGAATGGCGAGAAGTTATTACCCGAGCCAAATCAACCTGGGTTCTATACAGGAAAAGCTCATCCAACCAAGCCAAATTCTTCCTCAAGAAATATTGATGTATATTCCTTCAATGAAATGTCTAACTCATTGTTGGAGCCAAGGTAA 2445 0.3935 MKFLSFMIMVAYILVSSLRISIANDSMNVLQSMSDGVSLVSKGGKFEFGFFSPGYSQKRYVGIWYKNIPIQTVVWVANKANPINDSSGIITLNSTGNLVLTQNAYLVWYTNNSHKQAQNPVVVLLDSGNLVIKNEEETDPEVCLWQSFDYPSDTLLPGMKLGRNIRTGHEWKLTSWENPNDPSPGDIYRVLELYNYPELYVMKGKKKVYRSGPWNGLYFSGLPYLQNNTIFGYNFVSNKDEIYFTFSLLNNFVIERTVVNQTGIVYRYVWLEGDHNWTMHRSYPKEFCDNYGLCGAYGNCIINQTQGCQCLKGFSPKSPQAWASSDWSQGCVRNKPLSCNGEHKDGFVKFEGLKVPDTTQTWLDKTIGLEECRVKCLNNCSCMAYSNSDIRGAGSGCVMWYGDLIDMRQFETGGQGLHIRMSASESEPEDGHERNTPTIVASTIAAICGALLISSYFICRNRRNNAVTNYSKDKSEKDIDLPTFDFSFISNATNDFSQSEKLGQGGFGSVYKGILPDGQEIAVKRLSKTSGQGLDEFKNEVMLIAKLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDSTRHTLLGWTKRFEIIGGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMNPKISDFGMARTFGLDQDEANTNRVMGTYGYMPPEYVVHGSFSVKSDVFSFGVIVLEIISGKKNRAFYDPHHHLNLLGHAWRLWIEKRPTELMDDLVDNSACPSEIIRYIHIGLLCVQQRPEDRPNMSSVTLFLNGEKLLPEPNQPGFYTGKAHPTKPNSSSRNIDVYSFNEMSNSLLEPR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1164 814 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Gso12g1164 814 Gene3D Phosphorylase Kinase; domain 1 457 571 - -
Gso12g1164 814 PANTHER - 12 808 - -
Gso12g1164 814 Pfam PAN-like domain 339 407 IPR003609 -
Gso12g1164 814 Pfam Protein tyrosine and serine/threonine kinase 498 764 IPR001245 GO:0004672|GO:0006468
Gso12g1164 814 Gene3D - 19 148 IPR036426 -
Gso12g1164 814 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Gso12g1164 814 CDD STKc_IRAK 502 763 - -
Gso12g1164 814 CDD PAN_AP_plant 336 420 - -
Gso12g1164 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Gso12g1164 814 MobiDBLite consensus disorder prediction 777 797 - -
Gso12g1164 814 SUPERFAMILY Protein kinase-like (PK-like) 480 765 IPR011009 -
Gso12g1164 814 Gene3D Transferase(Phosphotransferase) domain 1 572 772 - -
Gso12g1164 814 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Gso12g1164 814 SMART ntp_6 342 421 IPR003609 -
Gso12g1164 814 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 808 - -
Gso12g1164 814 ProSiteProfiles Protein kinase domain profile. 496 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1164 814 CDD B_lectin 31 151 IPR001480 -
Gso12g1164 814 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gso12g1164 814 SMART blect_4 30 151 IPR001480 -
Gso12g1164 814 Pfam D-mannose binding lectin 72 176 IPR001480 -
Gso12g1164 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Gso12g1164 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Gso12g1164 814 SMART serkin_6 496 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1164 Gso-Chr12 17603080 17607142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1164 431 781 Receptor kinase-like Gene Family AT4G23230 53.390 8.58e-130 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1164 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1164 - - gmx:100801916 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1164 12 17603080 17607142 Gso6g2187 6 41915481 41919179 GST