Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1162 ATGGAAATTTTTTCTGTCGTGATTTTTATTGTTTCTTATATGCTCGTTCCATCTCTCAAAATTTCCGCAGCTACCCTCGATGTGTCACAGTATGTCACAGACGGTGAGACCTTGGTGTCCAACAGTGGAGTTTTTGAGCTTGGTTTTTTCAGCCCGGGAAAATCCACAAAGCGTTACCTGGGGATTTGGTATAAAAATATTACTAGTGATAGAGCTGTTTGGGTTGCAAACCGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACATTCAGCACCACAGGCAATCTTGAGCTCAGACAAAATGACTCCGTTGTTTGGTCTACTAACTATAAAAAACAAGCACAGAATCCAGTAGCAGAGCTCTTAGACACTGGAAATTTTGTGGTAAGAAATGAGGGAGACACAGATCCAGAAACGTACTCGTGGCAAAGCTTTGACTATCCTTCAGATACACTTTTGCCCGGAATGAAGTTGGGATGGGACCTCAGAACCGGTCTGGAACGCAAACTAACGTCTTGGAAGAGTCCTGATGATCCATCTGCTGGAGATTTCTCTTGGGGTCTAATGCTCCATAATTATCCTGAGTTTTATCTGATGATTGGAACACACAAGTACTACCGCACTGGACCATGGAATGGACTTCATTTCAGTGGATCATCAAACCGAACTCTAAATCCGCTGTATGAGTTCAAGTATGTCACTACAAATGATCTCATTTACGCCTCCAATAAGGTTGAGATGTTCTACTCGTTTAGCCTCAAGAATAGTTCTATCGTCATGATAGTCAACATAAATGAAACCCTATCTCAAATCCAAACCCAAGTATGGTCGGAGGACGGGCAAATATGGGTGATTTATGAAACTACCCCAGGAGATTACTGTGATGTGTATGCCGTCTGTGGACCCAACGCAAATTGCAGGATTACAGAACCACCTGTTTGCCAATGTTTAAAAGGATTCAAACCAAAGCCACCACAAGAATGGATCCCCTCAATGGATTGGAGTCAAGGATGTGTCCGACCTAAACCATTAAGCTGCGAAGAAATCGACTACATGGATCACTTTGTTAAATATGTAGGACTTAAGGTACCAGATACTACATATACTTGGCTGGATGAGAATATTAATTTAGAGGAATGCAGAATTAAATGCTTCAATAATTGCTCTTGCATGGCCTTTTCTAATTCAGACATAAGAGGAGGAGGTAGTGGTTGTGTCCTTTGGTTTGGCGATCTAATTGACATCAGACAGTATCCAACTGGCGAGCAAGATCTATATATCCGGATGCCTGCTATGGAGTCCATCAACCAACAAGAACATGGACACAACAGCGTGAAGATAATAATTGCTACAACAATTGCTGGAATCAGTGGGATACTTTCATTTTGCATTTTTGTCATATACAGAGTCCGAAGGAGCATTGCTGATAAGTTCAAGACAAAAGAGAACATCGAGAGACAGCTAAAAGATCTGGATCTGCCATTGTTTGATCTGCTGACAATCACTACTGCCACTTACAATTTCTCGTCAAATAGTAAAATTGGACATGGTGCTTTTGGACCTGTATACAAGGGAAAATTGGCCGATGGACAAGAAATTGCTGTGAAGAGACTTTCAAGCAGTTCTGGGCAAGGAATAACGGAGTTCGTAACAGAAGTAAAATTGATTGCAAAGCTTCAACACCGAAATCTTGTAAAGCTTCTTGGTTTTTGCATTAAACGACAAGAAAAAATACTAGTATATGAATACATGGTTAATGGAAGCCTAGACTCCTTTATTTTTGATAAAATAAAGGGTAAATTTCTGGATTGGCCTCGACGCTTCCACATAATATTTGGAATAGCTCGAGGACTTCTGTATCTTCATCAAGATTCTCGATTAAGGATTATCCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGAGTTGTTGGGACTTATGGATACATGGCCCCAGAGTATGCTGTTGATGGGCTATTTTCAATCAAATCTGACGTTTTTAGCTTTGGTATTATGTTGTTGGAGATTATATGTGGTAACAAAAATAGAGCTCTCTGTCATGGAAACCAGACACTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCAAAATGTTTTACTGTTGATTGACTCAAGCATAAAGGATTCGTGTGTCATTCCAGAAGTACTGCGATGCATCCATGTTAGTCTCTTGTGTGTGCAACAATACCCAGAGGATAGGCCATCTATGACCTTCGTAATTCAAATGTTAGGGAGTGAGACGGAACTGATGGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGATTTCAGATGAAGGAAATTTAAGCACAATTCCAAATCATATGTCTTCGAATGAAGAATTAACCATTACCTCGTTAAATGGCCGGTATCCAATGGAAATTTTTTCTTTCTTGATTTTTATTGTTTCTTATATGCTCGTTCCATCTCTCAAAATTTCGGCAGCTACCCTCAGTGTGTCACAGTATGTCACAGACGGTGAGACCTTGGTGTCCAACAGTGGAGTTTTTGAGCTTGGTTTTTTCAGCCCGGGAAAATCCACAAAGCGTTACCTGGGGATTTGGTATAAAAATATTACTAGTGATAGAGCTGTTTGGGTTTTAAACCGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACATTGAGCACCACAGGCAATCTTGAGCTCAGACAAAATGACTCCGTTGTTTGGTCTGCTAACTATAAAGAAGAAGCACAGAATCCAGTAGCAGAGCTCTTAGACACTGGAAATTTTGTGGTAAGAAATGAGGGAGACACAGATCCAGAAACGTACTCGTGGCAAAGCTTTGACTATCCTTCAGATACACTTTTGCCCGGAATGAAGTTGGGATGGGACCTCAGAACCGGTCTGGAACGCAAACTAACGTCTTGGAAGAGTCCTGATGATCCATCTGCTGGAGATTTCTCTTGGGGTCTAATGCTCCATAATTATCCTGAGTTTTATCTGATGAATGGAACACACAAGTACTACCGCACTGGACCATGGAATGGACTTCATTTCAGTGGATCATCAAACCGAACTCTAAATCCGCTGTATGAGTTCAAGTATGTCACTACAAATGATCTCATTTACGCCTCCAATAAGGTTGAGATGTTCTACTCGTTTAGCCTCATCAAGAATAGTTCTATCGTCATGATAGTCAACATAAATGAAACCATGTCTGACATCCGAACCCAAGTATGGTCGGAGGTCAGGCAAAAGTTGCTGATTTATGAAACTACCCCAAGAGATTACTGTGATGTGTATGCAGTCTGTGGAGCCAACGCGAATTGCAGGATTACAGACGCGCCTGCTTGCAATTGTTTAGAAGGATTCAAACCAAAGTCACCACAAGAATGGAGCTCAATGGATTGGAGCCAAGGATGTGTCCGACCTAAACCATTAAGCTGCGAAGAAATCGACTACATGGATCACTTTGTTAAATATGTAGGACTTAAGGTACCAGATACTACATATACTTGGCTGGATGAGAATATTAATTTAGAGGAATGCAGACTTAAATGCTTCAATAATTGCTCTTGCATGGCCTTTGCTAATTCAGACATAAGAGGAGGAGGTAGTGGTTGTGTCCTTTGGTTTGGCGATCTAATTGACATCAGACAGTATCCAACTGGCGAGCAAGATCTATATATCCGGATGCCTGCTAAGGAGTCCATCAACCAAGAAGAACATGGACACAACAGCGTGAAGATAATAATTGCTACAACAATTGCTGGAATCAGTGGGATACTTTCATTTTGCATTTTTGTCATATACAGAGTCCGAAGGAGCATTGCTGATAACTTCAAGACAAAAGAGAACATCGAGAGACAGCTAAAAGATCTGGATCTGCCATTGTTTGATCTGCTAACAATCACTGCTGCCACTTACAATTTCTCGTCAAATAGTAAAATTGGACATGGTGGTTTTGGACCTGTATACAAGGGAAAATTAGCCGATGGACAAGAAATTGCTGTGAAGAGACTTTCAAGCAGTTCTGGGCAAGGAATAACGGAGTTCGTAACAGAAGTAAAATTGATTGCAAAGCTTCAACACCGAAATCTTGTAAAGCTTCTTGGTTTTTGCATTAAACGACAAGAAAAAATACTAGTATATGAATACATGGTTAATGGAAGCCTAGACTCCTTTATTTTTGATAAAATAAAGGGTAAATTTCTGGATTGGCCTCGACGCTTCCACATAATATTTGGAATAGCTCGAGGACTTCTGTATCTTCATCAAGATTCTCGATTAAGGATTATCCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGAGTTGTTGGGACTTATGGATACATGGCCCCAGAGTATGCTGTTGATGGGCTATTTTCAATCAAATCTGACGTTTTTAGCTTTGGTATTTTGTTGTTGGAGATTATATGTGGTAACAAAAATAGAGCTCTCTGTCATGGAAACCAGACACTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCAAAATGTTTTACAGTTGATTGACTCAAGCATAAAGGACTCGTGTGTCATTCCAGAAGTACTGCGATGCATCCATGTTAGTCTCTTGTGTGTGCAACAATACCCAGAGGATAGGCCATCTATGACCTTGGTAATTCAAATGTTAGGGAGTGAGACGGACCTGATTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGTTTTCAGATGAAGGAAATTTAAGCACAATTCCTAATCATATGTCTTCGAATGAAGAATTAACCATTACCTCGTTAAATGGCCGGTGA 4965 0.403 MEIFSVVIFIVSYMLVPSLKISAATLDVSQYVTDGETLVSNSGVFELGFFSPGKSTKRYLGIWYKNITSDRAVWVANRENPINDSSGILTFSTTGNLELRQNDSVVWSTNYKKQAQNPVAELLDTGNFVVRNEGDTDPETYSWQSFDYPSDTLLPGMKLGWDLRTGLERKLTSWKSPDDPSAGDFSWGLMLHNYPEFYLMIGTHKYYRTGPWNGLHFSGSSNRTLNPLYEFKYVTTNDLIYASNKVEMFYSFSLKNSSIVMIVNINETLSQIQTQVWSEDGQIWVIYETTPGDYCDVYAVCGPNANCRITEPPVCQCLKGFKPKPPQEWIPSMDWSQGCVRPKPLSCEEIDYMDHFVKYVGLKVPDTTYTWLDENINLEECRIKCFNNCSCMAFSNSDIRGGGSGCVLWFGDLIDIRQYPTGEQDLYIRMPAMESINQQEHGHNSVKIIIATTIAGISGILSFCIFVIYRVRRSIADKFKTKENIERQLKDLDLPLFDLLTITTATYNFSSNSKIGHGAFGPVYKGKLADGQEIAVKRLSSSSGQGITEFVTEVKLIAKLQHRNLVKLLGFCIKRQEKILVYEYMVNGSLDSFIFDKIKGKFLDWPRRFHIIFGIARGLLYLHQDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGIMLLEIICGNKNRALCHGNQTLNLVGYAWTLWKEQNVLLLIDSSIKDSCVIPEVLRCIHVSLLCVQQYPEDRPSMTFVIQMLGSETELMEPKEPGFFPRRISDEGNLSTIPNHMSSNEELTITSLNGRYPMEIFSFLIFIVSYMLVPSLKISAATLSVSQYVTDGETLVSNSGVFELGFFSPGKSTKRYLGIWYKNITSDRAVWVLNRENPINDSSGILTLSTTGNLELRQNDSVVWSANYKEEAQNPVAELLDTGNFVVRNEGDTDPETYSWQSFDYPSDTLLPGMKLGWDLRTGLERKLTSWKSPDDPSAGDFSWGLMLHNYPEFYLMNGTHKYYRTGPWNGLHFSGSSNRTLNPLYEFKYVTTNDLIYASNKVEMFYSFSLIKNSSIVMIVNINETMSDIRTQVWSEVRQKLLIYETTPRDYCDVYAVCGANANCRITDAPACNCLEGFKPKSPQEWSSMDWSQGCVRPKPLSCEEIDYMDHFVKYVGLKVPDTTYTWLDENINLEECRLKCFNNCSCMAFANSDIRGGGSGCVLWFGDLIDIRQYPTGEQDLYIRMPAKESINQEEHGHNSVKIIIATTIAGISGILSFCIFVIYRVRRSIADNFKTKENIERQLKDLDLPLFDLLTITAATYNFSSNSKIGHGGFGPVYKGKLADGQEIAVKRLSSSSGQGITEFVTEVKLIAKLQHRNLVKLLGFCIKRQEKILVYEYMVNGSLDSFIFDKIKGKFLDWPRRFHIIFGIARGLLYLHQDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHGNQTLNLVGYAWTLWKEQNVLQLIDSSIKDSCVIPEVLRCIHVSLLCVQQYPEDRPSMTLVIQMLGSETDLIEPKEPGFFPRRFSDEGNLSTIPNHMSSNEELTITSLNGR* 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1162 1654 CDD PAN_AP_plant 1172 1259 - -
Gso12g1162 1654 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Gso12g1162 1654 Gene3D Phosphorylase Kinase; domain 1 469 584 - -
Gso12g1162 1654 Gene3D Phosphorylase Kinase; domain 1 1298 1412 - -
Gso12g1162 1654 Pfam D-mannose binding lectin 901 1003 IPR001480 -
Gso12g1162 1654 Pfam D-mannose binding lectin 73 175 IPR001480 -
Gso12g1162 1654 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Gso12g1162 1654 ProSiteProfiles Protein kinase domain profile. 509 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1162 1654 Pfam S-locus glycoprotein domain 207 324 IPR000858 GO:0048544
Gso12g1162 1654 Pfam S-locus glycoprotein domain 1035 1154 IPR000858 GO:0048544
Gso12g1162 1654 SMART ntp_6 351 430 IPR003609 -
Gso12g1162 1654 SMART ntp_6 1179 1258 IPR003609 -
Gso12g1162 1654 SMART serkin_6 509 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1162 1654 SMART serkin_6 1337 1615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1162 1654 CDD PAN_AP_plant 344 431 - -
Gso12g1162 1654 SUPERFAMILY Protein kinase-like (PK-like) 1320 1608 IPR011009 -
Gso12g1162 1654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 825 - -
Gso12g1162 1654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 861 1653 - -
Gso12g1162 1654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1458 1470 IPR008271 GO:0004672|GO:0006468
Gso12g1162 1654 CDD STKc_IRAK 1343 1608 - -
Gso12g1162 1654 CDD B_lectin 29 149 IPR001480 -
Gso12g1162 1654 Pfam Protein tyrosine and serine/threonine kinase 512 779 IPR001245 GO:0004672|GO:0006468
Gso12g1162 1654 Pfam Protein tyrosine and serine/threonine kinase 1340 1607 IPR001245 GO:0004672|GO:0006468
Gso12g1162 1654 SMART blect_4 29 149 IPR001480 -
Gso12g1162 1654 SMART blect_4 857 977 IPR001480 -
Gso12g1162 1654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Gso12g1162 1654 ProSiteProfiles PAN/Apple domain profile. 1175 1259 IPR003609 -
Gso12g1162 1654 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Gso12g1162 1654 SUPERFAMILY Protein kinase-like (PK-like) 492 780 IPR011009 -
Gso12g1162 1654 CDD B_lectin 857 977 IPR001480 -
Gso12g1162 1654 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Gso12g1162 1654 ProSiteProfiles Protein kinase domain profile. 1337 1622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1162 1654 SUPERFAMILY alpha-D-mannose-specific plant lectins 900 1008 IPR036426 -
Gso12g1162 1654 ProSiteProfiles Bulb-type lectin domain profile. 851 971 IPR001480 -
Gso12g1162 1654 Gene3D Transferase(Phosphotransferase) domain 1 585 791 - -
Gso12g1162 1654 Gene3D Transferase(Phosphotransferase) domain 1 1413 1617 - -
Gso12g1162 1654 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 861 1653 - -
Gso12g1162 1654 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 33 825 - -
Gso12g1162 1654 CDD STKc_IRAK 515 780 - -
Gso12g1162 1654 Gene3D - 846 974 IPR036426 -
Gso12g1162 1654 Gene3D - 19 146 IPR036426 -
Gso12g1162 1654 Pfam PAN-like domain 1181 1244 IPR003609 -
Gso12g1162 1654 Pfam PAN-like domain 353 416 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1162 Gso-Chr12 17386684 17402027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1162 445 797 Receptor kinase-like Gene Family AT4G23190 52.646 9.58e-118 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1162 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1162 - - gmx:100812007 3321.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1162 12 17386684 17402027 Gso6g2189 6 41941091 41945086 GST
Gso11g3027 11 46125311 46129622 Gso12g1162 12 17386684 17402027 PCT
Gso12g1162 12 17386684 17402027 Gso11g3027 11 46125311 46129622 PCT