Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1155 ATGAGTATCATAGTTTATACACTCTTTGTCTCTTCTCTTGTAGTTTCCATAGCTGCAGACACACCATCCAATTCACAGTTCCAATCCCTCAGTCCTGGAGAGACCATAGTTTCCCCAAGAGGAATCTTTGAACTTGGTTTCTTCAATCTTGGAAATCCAAACAAAAGCTACCTCGCAATTCGGTACAAGAGCTATCCGGATCAAACATTTGTTTGGGTTGCAAACGGTGCCAACCCAATCAATGACTCCTCAGCCATATTGAAACTAAACAGTCCTGGCAGTTTGGTCCTTACACACTACAATAATCATGTTTGGTCCACAAGTTCTCCAAAAGAAGCAATGAATCCAGTGGCAGAGCTATTGGATTCTGGTAATCTTGTGATAAGAGAGAAGAATGAAGCAAAGCTAGAAGGGAAAGAATATTTGTGGCAAAGTTTTGATTACCCTTCTAACACGATGTTGGCAGGGATGAAGATTGGTTGGGACCTTAAAAGGAAGATAAATAGAAGACTCATAGCATGGAAGAGTGATGATGATCCAACCCCAGGAGACTTATCATGGATTATTGTGCTTCATCCCTATCCTGAAATTTACATGATGAGTGGAACAAAGAAGCACCACAGACTTGGACCGTGGAACGGCTTGCGTTTCAGCGGCATGCCCGAGATGAAGCCTAATCCTGTTTTCAATTACAAGTTTGTCTCCAACAAGGACGAGGTTACCTACATGTGGACATTGCAGACTAGCTTGATCACAAAAGTGGTTCTCAACCAAACCTCGCAACAGCGTCCTCGCTACGTGTGGTCCGAGGCCACTAGATCGTGGAACTTCTACTCAACCATGCCAGGAGAGTACTGTGACTATTATGGCGTTTGCGGGGCCAATTCATTTTGCAGCTCCACTGCATCGCCATTGTGTGACTGCTTAAAAGGGTTCAAGCCGAAGTCTCCGGAGAAATGGAACTCAATGTATCGGACAGAAGGATGTCGCCTGAAAAGTCCACTGACTTGCATGCTTGATGGATTTGTTCATGTTGATGGTTTGAAAGTGCCAGATACTACAAATACGTCTGTGGACGAGAGTATTGATCTTGAGAAATGCAGAACCAAGTGCTTGAATAATTGTTCCTGCATGGCATATACCAATTCAAATATAAGTGGAACAGGTAGTGGCTGTGTCATGTGGTTTGGCGATTTATTAGACATCAAATTGTATCCAGCACCAGAAAGTGGGCAGCGTCTATATATAAGGTTGCCTCCTTCCGAATTAGATTCTATCAGGCACAAGGTGTCTAAAATAATGTATGCAACCTCCGTTGCTGCAGCTATAGGAGTTATACTTGCTATTTATTTTCTCTACAGAAGGAAAATTTATGAGAAATCAATGGCCGAATATAACAATGAAAGTTATGTGAATGATCTGGATCTGCCATTGCTTGATTTGTCAATAATCATTGTAGCCACAAACAAATTCTCAGAGGGAAACAAGATTGGAGAAGGTGGCTTTGGATCTGTATATTGGGGAAAATTAGCCAGTGGGCTAGAAATTGCTGTGAAGAGACTCTCAAAGAACTCGGATCAAGGAATGAGCGAGTTCGTAAACGAAGTAAAACTGATTGCAAGAGTTCAACACAGAAATCTTGTAAAGCTTCTTGGCTGTTGCATTCAGAAAAAAGAGAAAATGCTAGTTTATGAATACATGGTTAACGGCAGCCTTGACTACTTCATATTTGATTCTACCAAAGGGAAATTGCTAGATTGGCCAAAGCGTTTCCACATAATTTGTGGAATTGCTCGGGGACTTATGTACCTTCATCAAGATTCTCGATTGAGGATTGTCCATAGAGATCTCAAAGCAAGTAATGTTTTACTAGATGATACTTTGAATCCAAAAATTTCAGATTTTGGAGTGGCTAAAACTTTTGGAGAAGAGAATATTGAAGGAAATACAAATAGAATTGTTGGAACATATGGGTACATGGCACCAGAATATGCTATCGATGGGCAATTTTCTATAAAATCTGACGTCTTCAGCTTTGGTGTTTTACTGTTGGAGATTATATGTGGGAAGAAAAGTAGATGTTCTAGTGGGAAGCAAATTGTTCACCTTGTTGATCATGTGTGGACATTGTGGAAAAAAGATATGGCTTTACAAATAGTTGACCCAAACATGGAGGATTCATGCATTGCGTCTGAAGTGTTACGTTGCATCCATATTGGGCTCTTGTGCGTGCAACAATACCCAGAGGATAGGCCTACAATGACCTCAGTGGTTCTCTTGTTGGGGAGTGATGAGGTGCAATTGGATGAACCTAAAGAGCCAGGGCATTTTGTGAAGAAGGAATCTATTGAAGCAAATTCAAGCTCATGTAGTTCAACCAATGCGATGTCCATAACCTTATTAACTGCTCGCTGA 2415 0.412 MSIIVYTLFVSSLVVSIAADTPSNSQFQSLSPGETIVSPRGIFELGFFNLGNPNKSYLAIRYKSYPDQTFVWVANGANPINDSSAILKLNSPGSLVLTHYNNHVWSTSSPKEAMNPVAELLDSGNLVIREKNEAKLEGKEYLWQSFDYPSNTMLAGMKIGWDLKRKINRRLIAWKSDDDPTPGDLSWIIVLHPYPEIYMMSGTKKHHRLGPWNGLRFSGMPEMKPNPVFNYKFVSNKDEVTYMWTLQTSLITKVVLNQTSQQRPRYVWSEATRSWNFYSTMPGEYCDYYGVCGANSFCSSTASPLCDCLKGFKPKSPEKWNSMYRTEGCRLKSPLTCMLDGFVHVDGLKVPDTTNTSVDESIDLEKCRTKCLNNCSCMAYTNSNISGTGSGCVMWFGDLLDIKLYPAPESGQRLYIRLPPSELDSIRHKVSKIMYATSVAAAIGVILAIYFLYRRKIYEKSMAEYNNESYVNDLDLPLLDLSIIIVATNKFSEGNKIGEGGFGSVYWGKLASGLEIAVKRLSKNSDQGMSEFVNEVKLIARVQHRNLVKLLGCCIQKKEKMLVYEYMVNGSLDYFIFDSTKGKLLDWPKRFHIICGIARGLMYLHQDSRLRIVHRDLKASNVLLDDTLNPKISDFGVAKTFGEENIEGNTNRIVGTYGYMAPEYAIDGQFSIKSDVFSFGVLLLEIICGKKSRCSSGKQIVHLVDHVWTLWKKDMALQIVDPNMEDSCIASEVLRCIHIGLLCVQQYPEDRPTMTSVVLLLGSDEVQLDEPKEPGHFVKKESIEANSSSCSSTNAMSITLLTAR* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1155 804 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Gso12g1155 804 CDD B_lectin 28 149 IPR001480 -
Gso12g1155 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Gso12g1155 804 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 803 - -
Gso12g1155 804 Pfam D-mannose binding lectin 69 175 IPR001480 -
Gso12g1155 804 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 30 803 - -
Gso12g1155 804 SUPERFAMILY Protein kinase-like (PK-like) 478 777 IPR011009 -
Gso12g1155 804 CDD STKc_IRAK 497 758 - -
Gso12g1155 804 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Gso12g1155 804 PIRSF SRK 1 804 IPR024171 GO:0004674
Gso12g1155 804 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Gso12g1155 804 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Gso12g1155 804 SMART ntp_6 337 418 IPR003609 -
Gso12g1155 804 CDD PAN_AP_plant 334 419 - -
Gso12g1155 804 Pfam Protein tyrosine and serine/threonine kinase 494 758 IPR001245 GO:0004672|GO:0006468
Gso12g1155 804 SMART blect_4 27 149 IPR001480 -
Gso12g1155 804 Gene3D Phosphorylase Kinase; domain 1 454 566 - -
Gso12g1155 804 ProSiteProfiles Protein kinase domain profile. 491 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1155 804 Pfam PAN-like domain 339 402 IPR003609 -
Gso12g1155 804 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1155 804 Gene3D - 22 146 IPR036426 -
Gso12g1155 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 180 IPR036426 -
Gso12g1155 804 Gene3D Transferase(Phosphotransferase) domain 1 567 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1155 Gso-Chr12 17293251 17296969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1155 430 784 Receptor kinase-like Gene Family AT4G23190 50.696 9.54e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1155 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1155 - - gmx:100810407 1617.44