Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1139 ATGGACTTGAATCAATTTTTAAATTTTAACGTTATTAGTTCGGAAGGATTCCCTTGCACATCGTCTTGTACTCCTATTTCACCAATATCCAACCAGTTGCTTGGATCCTTGAAACTTGACATAGGAAACTCACCTAACTCGGCCCTTTCTAGTCATTTTGATTCTGATACTCTTTCTTCTGCATTAAGTGACAGTCAGGAATTGCACACCTCTGGGGAAATTCACTCTGGTGTCAACTCTTGCAAGTCTTTGCAGGAAAGCAATCATTATTTGCACAGGCCAGTCTCATTTGTAGACCATCTCCAAGACGGTTTACATCTATCTACTAGGAGCTTTCTTCCACAGGATGCAAGTTATGACCATGAAACTAGACATGCATTGCTGGAATTAGAAACAGCTTTGATGGCACCTGATGGTGAAGATCAAATCACCACATCAAGCACTTCTTTGGGTGTTGGCAGTAGACCAACAACATCTTGCCAAAGAAATAGGTCCTGGAGCTCTGAGGGCCAGTCAAGTGATGTTGCACATGTAGAGAAGCACCACAAATCAGTGGAGGAAGAATCGCTGCAAGGATTTCCATCATGCAATTTGAAACAATTGCTGATTGTATGTGCCAAAGCCTTGTCTGAAAACAACATGCAACATTTTGATCAATTGATAGAAAAAGCTAGAAGTGCTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTTGGTGCTTATTTGGTAGAAGGGCTTGTTGCAAGGAAGGAGGCATCAGGAAATAACATCTACCATGCCCTAAGATGCAGAGAGCCTGAGGGAAAAGATTTACTCTCTTACATGCAGCTACTGTATGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGCGCTATTGCTGAAGCATGTAGGAATGAGGACCAAATTCATATCATAGACTTTCAGATTGGTCAGGGAACTCAATGGGTGACACTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGAGCTCCCCATGTGCGGATCACAGGGATTGACGATCCCCTTTCTAAATATGTTCGTGGTGATGGACTGGAAGCTGTTGGGAAAAGGTTGGCTGCGATATCTCAGACATTTAACATCCGAGTTGAGTTCCACGGCGTGCCTGTTTTAGCTCCAGATGTGACAAAAGACGTGCTTGATGTTAGGCCTGGTGAGGCTTTGGCTGTGAACTTCCCTTTGCAACTCCATCATACAGCTGATGAAAGTGTTGATATGAGTAATCCAAGGGATGGACTTTTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACATTGGTTGAGCAAGAGTCAAACACAAATACCACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAATGTTTGAGTCCATTGATGTGTCTCTTCCGAGAAAGAGCAAGGTGCAGATTAATATGGAGCAACATTGTTTGGCTCGGGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAGCTGTTAGGCAAGTGGAAGTCTAGGTTAACAATGGCTGGCTTTCGTCAATATCCTTTGAGTTCTTATATGAATTCTGTCATAAGAAGCCTGCTGAGGTGCTATTCAAAACATTATAATCTTGTGGAGAAGGATGGGGCCATGCTACTGGGATGGAAGGACAGAAATTTGATTTCAACTTCAGCTTGGTATTGA 1707 0.4288 MDLNQFLNFNVISSEGFPCTSSCTPISPISNQLLGSLKLDIGNSPNSALSSHFDSDTLSSALSDSQELHTSGEIHSGVNSCKSLQESNHYLHRPVSFVDHLQDGLHLSTRSFLPQDASYDHETRHALLELETALMAPDGEDQITTSSTSLGVGSRPTTSCQRNRSWSSEGQSSDVAHVEKHHKSVEEESLQGFPSCNLKQLLIVCAKALSENNMQHFDQLIEKARSAVSITGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPEGKDLLSYMQLLYEICPYLKFGYMAANGAIAEACRNEDQIHIIDFQIGQGTQWVTLLQALAARPGGAPHVRITGIDDPLSKYVRGDGLEAVGKRLAAISQTFNIRVEFHGVPVLAPDVTKDVLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAMFESIDVSLPRKSKVQINMEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYMNSVIRSLLRCYSKHYNLVEKDGAMLLGWKDRNLISTSAWY* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1139 568 MobiDBLite consensus disorder prediction 138 181 - -
Gso12g1139 568 ProSiteProfiles GRAS family profile. 189 568 IPR005202 -
Gso12g1139 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 568 IPR005202 -
Gso12g1139 568 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 568 - -
Gso12g1139 568 Pfam GRAS domain family 198 567 IPR005202 -
Gso12g1139 568 MobiDBLite consensus disorder prediction 139 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1139 Gso-Chr12 16442147 16445796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1139 121 567 GRAS Transcription Factor Family AT5G48150 56.473 1.00e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso12g1139 GRAS 3.7e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1139 - - gmx:100797644 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1139 12 16442147 16445796 Gso6g2207 6 42655929 42659502 GST
Gso12g1827 12 41960674 41964088 Gso12g1139 12 16442147 16445796 PCT
Gso11g3036 11 46238820 46241668 Gso12g1139 12 16442147 16445796 PCT
Gso12g1139 12 16442147 16445796 Gso12g1827 12 41960674 41964088 PCT
Gso12g1139 12 16442147 16445796 Gso11g3036 11 46238820 46241668 PCT