Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1137 ATGAGAGAGGAGTCACTTGGACTGATTATTGGGGTTTCCATAGGTGTGGTTATTGGACTAGTTTTGGCAATTTTTGCGTTCTTCTGCCACAGGTACCATCGAAAGCGATCACAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATACCTATCCGCACAAATGGTGCTGATTCTTGTACCATTCTATCAGACTCAACCTTAGGTCCAGAATCACCGATAAAGTCAGGAAGAAATGGTATGCCCTTCTGGCTTGATGGGTTTAAGAAGAGTAGTAGCATGATCCCAGCGTCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCAACACATAATTTCACCACGGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTTGCAATGAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTCATGTTGTTGGGAAGGTTACACCATAGGAATCTGGTGAATTTGGTTGGATATTGTGCTGAAAAGGGGCAACGTATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAGTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTGGCACGAGGCTTGGAATATCTTCATAATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGCGAATAAGCATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATGGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCTCACCTCCAAGGAAACTTTGATGTCAAGGAACTCAATAAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCAAGTAACCGTCCTTCTATGAGGGACATAGTGCAAGTGTTAACAAGGATCCTTAAATCAAGGCACCATGGGAGTCATCACAAAAATTCCTTGTCAGCCACAGATGAACTTTTCATTGATACTGATCAGCTAGAGACCAAGATTTCTGTTACTGACCACAGGAGAGAAGAGTCTATGGATAGTGTAGCAGAGGTGTATGAAGTGTAG 1290 0.4357 MREESLGLIIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATIPIRTNGADSCTILSDSTLGPESPIKSGRNGMPFWLDGFKKSSSMIPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMSTGETVAVKVLAMNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQRMLVYVYMSNGSLASHLYSDVNEALCWDLRVHIALDVARGLEYLHNGAVPPVIHRDIKSSNILLDQSMLARVADFGLSREEMANKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIMAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSHLQGNFDVKELNKVAALAYKCINRAPSNRPSMRDIVQVLTRILKSRHHGSHHKNSLSATDELFIDTDQLETKISVTDHRREESMDSVAEVYEV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1137 429 PANTHER OS01G0253100 PROTEIN 8 397 IPR045271 GO:0004714|GO:0006468
Gso12g1137 429 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Gso12g1137 429 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 8 397 - -
Gso12g1137 429 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Gso12g1137 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Gso12g1137 429 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1137 429 SUPERFAMILY Protein kinase-like (PK-like) 89 375 IPR011009 -
Gso12g1137 429 Gene3D Transferase(Phosphotransferase) domain 1 189 401 - -
Gso12g1137 429 CDD STKc_IRAK 119 378 - -
Gso12g1137 429 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1137 Gso-Chr12 16336734 16353054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1137 5 419 Receptor kinase-like Gene Family AT3G46290 38.337 2.71e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gso12g1137 PK_Tyr_Ser-Thr 2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1137 - - gmx:100785634 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1137 12 16336734 16353054 Gso6g2208 6 42672241 42677910 GST
Gso12g1826 12 41939927 41945116 Gso12g1137 12 16336734 16353054 PCT
Gso11g3037 11 46259902 46264654 Gso12g1137 12 16336734 16353054 PCT
Gso12g1137 12 16336734 16353054 Gso12g1826 12 41939927 41945116 PCT
Gso12g1137 12 16336734 16353054 Gso11g3037 11 46259902 46264654 PCT