Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1136 ATGGAGAAAGTAGAAGAGAAAAAGAAGATAAAGGGAAACATTAAGGATAACATGCCAACAGTGTGGTTCTCTCTGAAGAAGTCCTTACACTGCAAATCTGAGCCATCTGATGTTCATGACCCCAAAACAAGGAAGCAGTTGAGCACAATCTTGACAAAGAGAGCAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTGATTCTGAGCAACTCAAGGTGTGAGCTGAAGATAACTGGCTATGGAGGGTTCCAAGAAGGGGTTGGAAGTGGTGGTAGCAATGCTGGAGGAGGTGGTATTGGTGGTTCTACTTTTGTGGGGACTTTGAGGCCTGGTACTCCAGGCCCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTATCAGATAAAGAAGGGTCTGGTCCTCATGGTGCTGGACTTCATCCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGCTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGATGCTGCTGAAGCTCATCATCTGTCCAAGCATGCTGTGACTGAACTTGTGGAAGGAGATTCTTCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCTGAAAACCAGTGTGGTAGAATTGAGAGAGTTTTGAAGGTTCACAACATGCAAAAGACTCTTGCAAGATTTGAAGAGTACAGGGAGACGGTGAAGATCAAGGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTTGCTGATGGGAATGAACTTCTGAGGTTCTATGGCACCTCTGTTTCATGCTCTCTTGGTCTCAATGGCTCTTCTACCCTCTGCCTATCAGAAAAGTGTTGTGTTTGCAGAATCATAAGGAATGGATTTTCAGCCAAGAAGGAGCTCAAGGGTGGTATTGGAGTCTTCACAACATCTACAAGTGGAAGGGCTTTTGAGTCCATAGAAATCATTGGTGAGGAACCATCACTGAGAAAAGCACTTATAGTGTGCAGAGTAATTGCTGGAAGGGTTCATAGGCCACTAGAAAACATTCAGGAAATGGCAGCACAAACAGGATTTGATTCATTGGCTGGGAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1329 0.4454 MEKVEEKKKIKGNIKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKQLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGSNAGGGGIGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSDKEGSGPHGAGLHPSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYRETVKIKASKLQKKHPRCLADGNELLRFYGTSVSCSLGLNGSSTLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIIGEEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1136 442 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Gso12g1136 442 SUPERFAMILY ADP-ribosylation 233 441 - -
Gso12g1136 442 MobiDBLite consensus disorder prediction 137 202 - -
Gso12g1136 442 PANTHER - 19 442 - -
Gso12g1136 442 MobiDBLite consensus disorder prediction 160 174 - -
Gso12g1136 442 Gene3D - 222 441 - -
Gso12g1136 442 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 19 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1136 Gso-Chr12 16269713 16272387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1136 18 442 C2H2 Transcription Factor Family AT5G54630 68.696 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1136 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1136 - - gmx:100785097 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1136 12 16269713 16272387 Gso6g2210 6 42697577 42700276 GST