Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1125 ATGGTTTCTAAGGCCATCATCCAATGCAGCTCTTCTTCATCTCACGTGATGAGGACATATGATGTGTTTGTCAGCTTCCGCGGTGAAGACACGCGTAACAACATCACTTCGTTTCTCCTTGGAAGTCTCGAAAGCAAAGGCATCGATGTCTTCAAAGATAATGAAGATCTCAGGAAAGGCGAATCCATAGCACCCGAGCTGCTACAAGCCATTGAAGTGTCTCGCATTTTCGTTGTGGTCTTCTCAAAGAACTATGCTTCTTCAACTTGGTGCTTGCGTGAACTAACACATATCTGCAATTGCACTCAAACATCGCCAGGAAGTGTTCTGCCTATTTTTTATGATGTTGATCCATCAGACGTGCGAAAACTGAGTGGATCTTATGAGGAAGCCTTTGCCAAATATAAAGAAAGATTCAGAGAAGACAGAGAGAAGATGAAGGAAGTGCAGACATGGAGAGAAGCCCTGAAAGAAGTGGGCGAACTCGGTGGTTGGGATATCCGAGATAAGTCACAAAATGCAGAGATTGAAAAAATTGTTCAAACCATAATAAAAAAATTGGGTTCCAAATTTTCAAGTCTTCCGAAAGATAATCTAGTTGGGATGGAATCTCGTGTTGAAGAATTAGTAAAGTGTTTGCGTTTGGGGTCTGTTAATGATGTTCGAGTTGTTGGAATTAGTGGCATGAGTGGAATAGGAAAGACTGAGCTTGCTCGTGCTTTGTATGAAAGAATCTCTGATCAATTTGATGTTCATTGTCTTGTTGATGATGTAAGCAAAATTTATCAAGATTCTGGTAGATTAGGTGTACAAAAACAGTTACTTTCTCAGTGTCTAAATGAAAAAAATCTAGAGATTTATGATGTTTCCCAAGGAACATGTTTGGCATGGAAGAGGCTACAAAATGCAAAGGCACTTGTAGTTTTTGATGAAGTTGTTAATGAAAGACAACTACAGATGTTTACAGGGAACAGAGACTCTCTATTACGCGAATGCCTAGGTGGAGGGAGCAGAATCATCATAATATCTAGGGATGAACATATATTGAGGACACATGGGGTAGATGATGTTTACCAAGTCCCATTGTTGGATAGAGAAGAAGCTGTTCAGTTGTTTTGCAAAAATGCTTTCAAAGATAATTTTATTATGAGTGGTTATGCAGAGTTTGCAGATGTTATACTGTCACAAGCTCAAGGCAATCCCTTAGCAATTAAGGCGGTGGGCTCATCTTTGTTTGGCTTAAATGCCCCACAGTGGAGAAGTGCAGTGGCTAAGCTAAGAGAACAAAAAAGTAGAGATATTATGGATGTGCTGCGAATTAGTTTTGATGAGTTGGATGACACAAACAAGGAAATATTTCTAGATATTGCTTGCTTCTTCAATAATTTTTATGTGAAATCTGTAATGGAAATTCTAGATTTTCGTGGATTTTACCCCGAACATGGCCTACAAGTTCTCCAAGACAGATCACTCATAATCAATGAATATGGGATCATTGGAATGCATGGCTTGTTGATAGATTTGGGCAGGTGCATTGTTCGAGAAAAATCACCTAAAGAGCCAAGCAATTGGAGCAGATTGTGGAAGTACCAAGATCTCTATAAAATCATGTCAAATAATATGGCAGCAGAGAAACTTGAAGCCATCGCTGTTGATTATGAATCAGATGATGAGGGGTTTCATGAAATAAGGGTCGATGCTTTATCGAAAATGAGTCACCTTAAGTTGCTCAAACTTTGGGGTGTGACTTCTTCTGGAAGCCTCAATCATCTTTCTGATGAATTAGGATATATTACTTGGGATAAATATCCTTTCGTATGTTTGCCTAAAAGTTTTCAGCCAAACAAACTAGTTGAGTTGTGCCTGGAATACAGCAACATCAAACATCTGTGGAAAGATAGAAAGCCTCTACACAATTTGAGACGTTTGGTTCTCTCTCATTCCAAAAATCTAATCGAGTTGCCAGATTTAGGGGAGGCTCTAAATCTTGAGTGGCTAGATCTGAAAGGATGCATAAAACTCAAGAAGATTAATCCATCCATCGGTCTTCTAAGAAAGCTGGCTTATTTGAATTTGAAAGACTGCACAAGTCTTGTTGAGTTACCACATTTCAAAGAGGACCTAAATCTTCAACATCTAACTCTTGAAGGATGTACACATCTCAAGCATATCAATCCATCCGTCGGTCTTCTAAGAAAGCTTGAATATTTGATTTTGGAAGACTGTAAAAGTCTAGTAAGCTTACCCAACAGCATATTGTGCCTCAATTCACTTAAATATTTGAGTCTATATGGCTGTTCAGGACTGTATAATAGCGGGTTATTAAAAGAACCTAGGGATGCAGAGCTTTTGAAGCAGCTGTGTATAGGTGAAGCTTCTACTGATTCCAAATCAATATCCTCCATAGTGAAAAGGTGGTTTATGTGGTCTCCACGTTTGTGGTATTCCAGAGCACATAACGACTCAGTTGGTTGTCTGTTGCCTTCCGCGCCAACTATCCCACCATCTATGATTCAACTTGATCTAAGTTACTGCAATTTAGTTCAAATCCCCGATGCTATTGGAAATTTACATTGCTTAGAAATCCTAAATTTAGAAGGAAACAGTTTTGCAGCACTGCCTGACCTCAAGGGGCTTTCCAAACTGCGTTATTTAAAATTAGACCATTGCAAGCACTTGAAAGATTTTCCTAAGCTCCCTGCACGAACTGATTTGTCATACACTTTCCTCTTACCAATACTGGGAAGAGCAGTAGAACTTCCAGTTTGGGGATTTAGTGTGCCTAAAGCACCAAATGTAGAACTTCCAAGAGCATTGGGATTAAGTATGTTCAATTGCCCAGAATTAGTTGAGAGGGAAGGCTGCAGTAGCATGGTTTTATCATGGATGATACAAATTGTTCAGGCGCACTACCAAAGCAATTTTGCGTGGTGGCCTATAGGAATGCCTGGATTTTCCAATCCATACATTTGTAGTGTTATTCCAGGAAGTGAAATAGAAGGGTGGTTCACCACTCAGCATGTGAGCAAGGACAACTTAATAACCATAGACCCACCTCCCCTTATGCAGCATGACAAATGCATTGGCGTTGCTTATTGTGTAGTATTCGCAGCTCATTCAACAGATTTGGAGATGGTTCCTCCAGAAACAGAACGAGGTTATCCTGTTATGGGCATCGTTTGGATTCCGGTGGATGTTCATGAAGATGTAGTCACAGACAAATCAGATCACCTGTGCTTATTCTATTCGCCTACGTATATAGGAATTGGAGACTGGAAATTAAAAGTGAAAATAATGGACAAGAAAGGTTTTCCTGTGGAGGTGAAGAAATACGGGTATCGTAGGGTACATGAAGAGGATCTAGATCTAGAACCATCACTCAACACAGCAGGAATCCGGAAGAGGAAAAGGGGAACTGATGAATAA 3426 0.3984 MVSKAIIQCSSSSSHVMRTYDVFVSFRGEDTRNNITSFLLGSLESKGIDVFKDNEDLRKGESIAPELLQAIEVSRIFVVVFSKNYASSTWCLRELTHICNCTQTSPGSVLPIFYDVDPSDVRKLSGSYEEAFAKYKERFREDREKMKEVQTWREALKEVGELGGWDIRDKSQNAEIEKIVQTIIKKLGSKFSSLPKDNLVGMESRVEELVKCLRLGSVNDVRVVGISGMSGIGKTELARALYERISDQFDVHCLVDDVSKIYQDSGRLGVQKQLLSQCLNEKNLEIYDVSQGTCLAWKRLQNAKALVVFDEVVNERQLQMFTGNRDSLLRECLGGGSRIIIISRDEHILRTHGVDDVYQVPLLDREEAVQLFCKNAFKDNFIMSGYAEFADVILSQAQGNPLAIKAVGSSLFGLNAPQWRSAVAKLREQKSRDIMDVLRISFDELDDTNKEIFLDIACFFNNFYVKSVMEILDFRGFYPEHGLQVLQDRSLIINEYGIIGMHGLLIDLGRCIVREKSPKEPSNWSRLWKYQDLYKIMSNNMAAEKLEAIAVDYESDDEGFHEIRVDALSKMSHLKLLKLWGVTSSGSLNHLSDELGYITWDKYPFVCLPKSFQPNKLVELCLEYSNIKHLWKDRKPLHNLRRLVLSHSKNLIELPDLGEALNLEWLDLKGCIKLKKINPSIGLLRKLAYLNLKDCTSLVELPHFKEDLNLQHLTLEGCTHLKHINPSVGLLRKLEYLILEDCKSLVSLPNSILCLNSLKYLSLYGCSGLYNSGLLKEPRDAELLKQLCIGEASTDSKSISSIVKRWFMWSPRLWYSRAHNDSVGCLLPSAPTIPPSMIQLDLSYCNLVQIPDAIGNLHCLEILNLEGNSFAALPDLKGLSKLRYLKLDHCKHLKDFPKLPARTDLSYTFLLPILGRAVELPVWGFSVPKAPNVELPRALGLSMFNCPELVEREGCSSMVLSWMIQIVQAHYQSNFAWWPIGMPGFSNPYICSVIPGSEIEGWFTTQHVSKDNLITIDPPPLMQHDKCIGVAYCVVFAAHSTDLEMVPPETERGYPVMGIVWIPVDVHEDVVTDKSDHLCLFYSPTYIGIGDWKLKVKIMDKKGFPVEVKKYGYRRVHEEDLDLEPSLNTAGIRKRKRGTDE* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1125 1141 SUPERFAMILY L domain-like 562 900 - -
Gso12g1125 1141 Gene3D Ribonuclease Inhibitor 819 951 IPR032675 -
Gso12g1125 1141 Gene3D Ribonuclease Inhibitor 708 791 IPR032675 -
Gso12g1125 1141 Gene3D Ribonuclease Inhibitor 555 707 IPR032675 -
Gso12g1125 1141 Gene3D - 15 188 IPR035897 -
Gso12g1125 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 697 IPR044974 GO:0006952
Gso12g1125 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 697 909 IPR044974 GO:0006952
Gso12g1125 1141 Gene3D - 362 446 IPR042197 -
Gso12g1125 1141 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Gso12g1125 1141 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 697 - -
Gso12g1125 1141 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 697 909 - -
Gso12g1125 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 456 IPR027417 -
Gso12g1125 1141 SUPERFAMILY "Winged helix" DNA-binding domain 433 536 IPR036390 -
Gso12g1125 1141 Gene3D - 189 357 IPR027417 -
Gso12g1125 1141 PRINTS Disease resistance protein signature 223 238 - -
Gso12g1125 1141 PRINTS Disease resistance protein signature 299 313 - -
Gso12g1125 1141 PRINTS Disease resistance protein signature 397 411 - -
Gso12g1125 1141 PRINTS Disease resistance protein signature 877 893 - -
Gso12g1125 1141 Pfam TIR domain 20 201 IPR000157 GO:0007165
Gso12g1125 1141 SMART till_3 19 162 IPR000157 GO:0007165
Gso12g1125 1141 Pfam NB-ARC domain 204 432 IPR002182 GO:0043531
Gso12g1125 1141 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1125 Gso-Chr12 15851849 15856830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1125 18 769 WRKY Transcription Factor Family AT4G12020 30.692 6.60e-84 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1125 - - gmx:100790778 2293.08