Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1113 ATGGCTACTACCATAACAGAGCAAGACACCTCATCACGTGCCCCGCACGTGCTCGATTACGCCACCACTACATCTGACGAGGAGACGGAACAGGACGAGGAGGAGGAGCTGGTGCCGGAGGAAAACGGCTTCGGGAACGGCGTACGGTGGTTTCCGGCGGCGAGCGGTTGCGGAGGGCGACGGAGCGGGGGAGGTGCGTTGGGTAGGGTTCTTGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGGGTTTTCCTGCTAGTGTGCGCCGCGGGGCTGTTCGTGGACCCTCTCTTCTTCTACGTGCTCTCCGTCAGCGACTCGTGCATGTGCGTCTTCGTGGATGGGTGGCTCGCTGTCACCGTCACGGTGCTGCGCTGCATGACGGATGCGCTTCACGTGTGGAACATGGTTATAAGGAGCAAGATGGCGAAACGCACCTTCGGATTGGGCGCCGCCACCGCTTCCGGCAGAGGATCTTCATCCTCCATCGGACTCAGAGACACCCGACCGTGCTCCGTCGCCATCGGTTATCTCAAGTCACGGACCGGATTCTTTTTTGACCTGTTTGTTATTCTTCCTCTACCACAGATTGTGCTTTGGGTGGCAATCCCCTCCTTGTTGGAGAAAGGTTCTGTTACATTGGTGATGACAGTGTTCTTAATTATTTTTCTATTCCAATACCTTCCCAAAATTTATCATTCGGTTTGCCATCTGCGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATCGCATATTTTGTTGCTTCTCATGCAGCAGGGGCGTGCTGGTACTTGCTGGGGATACAAAGGGCAGCCAAGTGTCTCAAAGTGCAGTGTGCGAAAACAAGTGGTTGTGGCATGAAAATCCTGTCTTGTCAAACGCCTATATATTACGGAAGCAACAGTTTGCTAGTTAGGGATAAGGCAAGGTTGGCTTGGGCAGAGAACAGGGAAGTGAGACACACATGCCTAAATGGTCCTGACAGCTACAACTATGGAGCTTATAGATGGACTGTTCAGCTTGTCACAAACGATAATCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGAAACCTAGAGAGTACAACTGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTATTTTTGCACGCAACAACGTCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAATATTGAATGGTGGATGAGAAAACGACGCTTGCCGCTAGGGTTTAGGCAGCGCGTGCGTAACTATGAGAGGCAGCGTTGGGCTGCCATGCGTGGGGTTGATGAATTCGAGATGACTAAAAATCTCCCTGAGGGATTAAGAAGAGACATCAAGTACCATCTTTGTCTAGACTTGGTGAGACAGGTGCCTCTATTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCTAGAGAAGGAGACCCAGTTCAGAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGCAGCCAAGTCCTAAGGGATGGTGTGAAGAGTTGTTGCATGTTAGGTCCAGGAAACTTCAGTGGGGACGAGCTCCTTTCGTGGTGTTTGAGGAGGCCTTTCATAGAACGCCTTCCGCCGTCTTCATCCACACTCATCACGTTGGAAACCACCGAGGCGTTCGGCCTTGAAGCCCAGGACGTGAAGTATGTGACACAACATTTCAGGTACACATTTGTTAAGGAAAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCATGGAGGAGGTACAAGCATAGGTTGACTTTGACTTCATTGTCCTTTATAAGGCCCAGGAGACCTTTGTCACGGTCTTCTTCCATCGGAGAGGACAAGCTTCGCCTCTACACAGCTTTGTTAACCTCCCCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2073 0.4978 MATTITEQDTSSRAPHVLDYATTTSDEETEQDEEEELVPEENGFGNGVRWFPAASGCGGRRSGGGALGRVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYVLSVSDSCMCVFVDGWLAVTVTVLRCMTDALHVWNMVIRSKMAKRTFGLGAATASGRGSSSSIGLRDTRPCSVAIGYLKSRTGFFFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCAKTSGCGMKILSCQTPIYYGSNSLLVRDKARLAWAENREVRHTCLNGPDSYNYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPLGFRQRVRNYERQRWAAMRGVDEFEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAQDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSIGEDKLRLYTALLTSPKPNQDDFDF* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1113 690 MobiDBLite consensus disorder prediction 25 39 - -
Gso12g1113 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 687 - -
Gso12g1113 690 SUPERFAMILY cAMP-binding domain-like 419 607 IPR018490 -
Gso12g1113 690 Pfam Ion transport protein 81 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso12g1113 690 SUPERFAMILY Voltage-gated potassium channels 73 414 - -
Gso12g1113 690 MobiDBLite consensus disorder prediction 1 24 - -
Gso12g1113 690 CDD CAP_ED 493 599 IPR000595 -
Gso12g1113 690 Pfam Cyclic nucleotide-binding domain 514 601 IPR000595 -
Gso12g1113 690 Gene3D Helix hairpin bin 418 484 - -
Gso12g1113 690 ProSiteProfiles cAMP/cGMP binding motif profile. 493 603 IPR000595 -
Gso12g1113 690 Gene3D Jelly Rolls 491 609 IPR014710 -
Gso12g1113 690 MobiDBLite consensus disorder prediction 1 39 - -
Gso12g1113 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 26 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1113 Gso-Chr12 15459082 15472863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1113 57 689 Ion Channels AT5G54250 78.538 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1113 K05391 - gmx:100783341 1324.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1113 12 15459082 15472863 Gso6g2250 6 43504033 43515074 GST