Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1102 ATGGCTTGCTCTTCATCACACACGAAGAATTTTGATGTGTTCGTGAGCTTTAGAGGTCTGGATACTCGTAATAGTTTCACTGATCATCTTTTTGCTGCTCTTCAAAGGAAAGGCATTGTTGCTTTCAGGGATAACCAAAATATCAAGAAAGGAGAACTCTTGGAGCCTGAGCTCTTGCAGGCAATCGAAGGATCACATGTTTTCATTGTTGTCTTCTCAAAAGACTATGCATCATCCACATGGTGCTTGAAAGAGCTGACAAAGATTTTTGATGGGGTTGAAGAAACAGGGCGAAGTGTACTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGGAAACAGAGTGGAAAGTTTGGAAAAACTTTTGCTGAACACGAAGAAAGGTTCAAAGATGATTTGGAAATGGTAAAAAAATGGAGGGAAGCTCTCAAAGCAATTGGCAATCGTAGTGGTTGGGATGTACAAAATAAGTCAGAACATGAAGAAATTGAAAAAATTGTTGAAGAGGTAATGAACCTACTGGGTCATAATCAAATTTGGAGTTTCAGTGGTGATTTAGTTGATATGAACTCTCGTGTGAAACAATTGGAAGAGCTTCTAGATTTGAGCGCAAATGATGTTGCTCGCGTTGTGGGAATTTGGGGGATGAGTGGAGTAGGAAAGACAACACTTTTTACTGCTTTGTTTGGTAAAATCTCTCCTCAATATGATGCTCATTGTTTCATTGATGATTTAAACAAAAATTGTGGGGATTTTGGAGCAACAAGTGCACAAAAACAACTTCTTTGTCAAGCTCTAAATCAAGGAAACATGGAGATACACAATCTTTCCCATGGAACCATGTTGATAAGAACTAGGCTACGTCGCTTAAAGACACTTATTGTTCTTGATAATGTTGATCAGGTTGAACAATTAGAGAATTTGGCTTTGCATCGTGAACATCTAGGTGAAGGGAGTAGAATTATCATAATCTCTAAAAATATGCATATCTTAAGAAATTATGGAGTAGATGAAGTTTACAATGTTCAACTCCTTAATAAGGATAAAGCTCTTCAATTACTTTGCAAAAAAGCTTTCAAGTCTGATGATATTGTGAAAGGGTATGAAGAGGTAACATCTGATGTACTGAAGTATGTCAATGGCCTTCCACTAGCAATCAAAGTATTGGGCTCATTTTTGTTTGATCGAGATGTTATTGAGTGGAGAAGTGCATTAACTAGAATGAAAGAAAATCCAAGGAAAGATATCATGGATGTATTGCGAATAAGTTTTGATGGATTGGAGACAATGGAAAAAGAAATATTTCTAGATATTGCTTGTTTCCTTTCAAATGTTCATTTCAGGTTTTATAACCCCTGTGCAACTCCTGAGAAAATTCTAGGCTATCGGGGATTTTATCCCAAAATTGGTATGAAAGTTCTTGTTGAAAAATCACTCATAAGTTATCATAAGGGGTATATTCAAATGCATGACTTGTTGAGAGAGTTAGGCAAGACTATTGTCCGAGAAAAGGCACCCAAGGAACCTAGAAAGTGGAGTAGGTTATGGGACTACAAGGATCTCCAAAAAGTTATGATAGAAAATAAGGAAGCCAAAAATCTTGAAGCGATAGTTATTGGTATAGGAGAATATCAAGAAGAGTTTTCACGACAAACAATGAAAGTAGATGCTCTATCAAAAATGATTCATCTTAAGTTACTCGTGCTTAAGAATGTGAAATTTTCAGGGATCCTCAATTCTCTTTCTAATGAATTGACATATTTAAATTGGAATAATTATCCTTTCACGTCTTTGCCATCAAGCTTTCATCCGGATCAACTTGTAGAATTGATTCTACCTTATAGCATAATCAAAGAATTGTGGAAAGATACAAAGTATCTGCCCAATTTGGAAACTCTAGATCTCAAATACTCCAAAAATCTTATTGAGATGCCAAACTTAAGTGGAGTCCCACATCTTAGGAGGCTCAATCTCGAAGGATGTACAAAAATTGTACGCATCGATCCATCCATTGGTACTCTAAGAGAGCTTGTTTCTCTTAATTTGAGGAATTGTAAAAATCTTTTCCTTAATCTGAATATCATTTTTGGGCTTAGTTCTCTTGTGGACCTTAATCTCTCAGGCTGTTCAAAATTACTTAATAATAGGCTGTTACAGAAACCAAGGGAGACAGAACATATGGAAAAAATTGATGAAAATAGAAGTTCCATCCAATTATCAACATCCTCTGTATACCAAATGCTAATGCTGCCTTTCTATATTTTCTCCTCTTGGAAACACGAAGATTCACTTGGTTTGTTGGTTCCTTATTTATCTCGTTTCCCATGCTTGCGTCATCTTAATCTGAGCTTCTGCAATCTACTTCAAATCCCTGATGCTATTGGGAACTTACATTCTTTACTAATATTAAATTTGGGGGGAAACAGATTTGTGACACTACCTAATACCATTAAGCAACTTTCCAAACTTCGTTCTCTAAACTTAGAGCACTGCAAGCAGCTGAAATATATGCCCGAGCTTCCAACACCAAAAAAGAAAAAAAATCGCAAACATTTCGGGGAATTAATCACTTTCAATTGCCCCAATTTCAGTGAAATGGAACTTATTTATGGCATGGTTTTTTCTTGGACGACACAAATCTTTGAGGTACACTGGCAATCCTCTCTTTCCTTTAAAAGGCTTATTATTGTTATTCCTGGAACTGAAATTCCAAGGTGGTTCAGTAAACAAAATGAGGGTGATTCAATAAGCATGGACCCGTCTCCTCTTATGGAAGACCCAAATTGGATAGGTGTTGCCTGTTGTGCATTATTAGTGGCACATCATGATCCGTCTAATATTGAATGA 2850 0.366 MACSSSHTKNFDVFVSFRGLDTRNSFTDHLFAALQRKGIVAFRDNQNIKKGELLEPELLQAIEGSHVFIVVFSKDYASSTWCLKELTKIFDGVEETGRSVLPIFYDVTPSEVRKQSGKFGKTFAEHEERFKDDLEMVKKWREALKAIGNRSGWDVQNKSEHEEIEKIVEEVMNLLGHNQIWSFSGDLVDMNSRVKQLEELLDLSANDVARVVGIWGMSGVGKTTLFTALFGKISPQYDAHCFIDDLNKNCGDFGATSAQKQLLCQALNQGNMEIHNLSHGTMLIRTRLRRLKTLIVLDNVDQVEQLENLALHREHLGEGSRIIIISKNMHILRNYGVDEVYNVQLLNKDKALQLLCKKAFKSDDIVKGYEEVTSDVLKYVNGLPLAIKVLGSFLFDRDVIEWRSALTRMKENPRKDIMDVLRISFDGLETMEKEIFLDIACFLSNVHFRFYNPCATPEKILGYRGFYPKIGMKVLVEKSLISYHKGYIQMHDLLRELGKTIVREKAPKEPRKWSRLWDYKDLQKVMIENKEAKNLEAIVIGIGEYQEEFSRQTMKVDALSKMIHLKLLVLKNVKFSGILNSLSNELTYLNWNNYPFTSLPSSFHPDQLVELILPYSIIKELWKDTKYLPNLETLDLKYSKNLIEMPNLSGVPHLRRLNLEGCTKIVRIDPSIGTLRELVSLNLRNCKNLFLNLNIIFGLSSLVDLNLSGCSKLLNNRLLQKPRETEHMEKIDENRSSIQLSTSSVYQMLMLPFYIFSSWKHEDSLGLLVPYLSRFPCLRHLNLSFCNLLQIPDAIGNLHSLLILNLGGNRFVTLPNTIKQLSKLRSLNLEHCKQLKYMPELPTPKKKKNRKHFGELITFNCPNFSEMELIYGMVFSWTTQIFEVHWQSSLSFKRLIIVIPGTEIPRWFSKQNEGDSISMDPSPLMEDPNWIGVACCALLVAHHDPSNIE* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1102 949 Pfam NB-ARC domain 194 415 IPR002182 GO:0043531
Gso12g1102 949 Pfam TIR domain 10 173 IPR000157 GO:0007165
Gso12g1102 949 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 916 - -
Gso12g1102 949 SMART till_3 10 150 IPR000157 GO:0007165
Gso12g1102 949 PRINTS Disease resistance protein signature 211 226 - -
Gso12g1102 949 PRINTS Disease resistance protein signature 287 301 - -
Gso12g1102 949 PRINTS Disease resistance protein signature 380 394 - -
Gso12g1102 949 PRINTS Disease resistance protein signature 626 642 - -
Gso12g1102 949 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 916 IPR044974 GO:0006952
Gso12g1102 949 Coils Coil 187 207 - -
Gso12g1102 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 439 IPR027417 -
Gso12g1102 949 Pfam Leucine rich repeat 778 833 IPR001611 GO:0005515
Gso12g1102 949 Gene3D Ribonuclease Inhibitor 761 909 IPR032675 -
Gso12g1102 949 Gene3D Ribonuclease Inhibitor 549 739 IPR032675 -
Gso12g1102 949 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Gso12g1102 949 Gene3D - 174 341 IPR027417 -
Gso12g1102 949 Gene3D - 345 429 IPR042197 -
Gso12g1102 949 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
Gso12g1102 949 CDD ABC_ATPase 210 341 - -
Gso12g1102 949 Gene3D - 3 173 IPR035897 -
Gso12g1102 949 SUPERFAMILY "Winged helix" DNA-binding domain 416 525 IPR036390 -
Gso12g1102 949 SUPERFAMILY L domain-like 556 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1102 Gso-Chr12 15032672 15036399 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1102 6 827 WRKY Transcription Factor Family AT4G12020 30.506 1.93e-84 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1102 - - gmx:100819678 1654.42