Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1100 ATGGCTTGCTCTTCATCACACACGAAGAATTTTGATGTGTTTGTGAGCTTTAGAGGTCTGGATACTCGTAATAGTTTCACTGATCATCTTTTTGCTGCTCTTCAAATGAAAGGCATTGTTGCTTTCAGGGATAACCAAAATATCAAGAAAGGAGAACTCTTGGAGCCTGAGCTCTTGCAGGCAATCGAAGGATCACATGTTTTCATTGTTGTCTTCTCAAAAGACTATGCATCATCCACATGGTGCTTGAAAGAGCTGAGAAAGATTTTTGATGGGGCTGAAGAAACAGGGCGAAGTGTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGGAAACAGAGTGGAAAGTTTGGAAAAGCTTTTGCTGAACACGAAGAAAGGTTCAAAGATGATTTGGAAATGGTAAAAAAATGGAGGGAAGCTCTCAAAGCAATTGGCAATCGTAGTGGTTGGGATGTACAAAATAAACCACAACATGAAGAAATTGAAAAAATTGTTGAAGAGGTAATGAACCTACTGGGTCATAATCAAATTTGGAGTTTCAGTGGTGATTTAGTTGATATGGACTCTCGTGTGAAACAATTGGAAGAGCTTCTAGATTTGAGCGCAAATGATGTTGTTCGCGTTGTGGGAATTTGGGGGATGAGTGGAGTAGGAAAGACAACACTTGTTAAAGCTTTATTTGGTAAAATCTCTCCTCAATATGATGCCCGTTGTTTCATTGATGATTTAAGCAAAACTTGTGGGGATTTTGGAGCAACAAGTGCACAAAAACAACTTCTTTGTCAAACTCTAAATCAAGCAAATATAGAGATACACAATCTTTCCCACGGAATCATGTTGATAAGAACTAGGCTACGTCGCTTAAAGACACTTATTGTTCTTGATAATGTTGATCGGGTTGAACAATTAGAGAATTTGGCTTTGCATCGTGAATATCCAGGTGAAAGGAGTAGAATCATCATAATCTCTAAAAATATGCATATCTTAACAAATTATGGAGTAGATGAAGTTTACAATGTTCAACTCCTTAATAAGGATAAGGCTCTTCAATTACTTTGCAAAAAAGCTTTCAAATCTGATGATATTGTGAAAGGGTATGAAGAGGTAACATCTGATGTACTGAAGTATGTCAAAGGCCTTCCACTAGCAATCAAAGTATTGGGCTCATTTTTGTTTGATCGAGATGTTTTTGAGTGGAGAAGTGCATTAACTAGAATGAAAGAAAATCTAAGTAAAGATATCATGAATGTGTTGCGAATAAGTTTTGATGGATTGGAGACAATGTAA 1296 0.3727 MACSSSHTKNFDVFVSFRGLDTRNSFTDHLFAALQMKGIVAFRDNQNIKKGELLEPELLQAIEGSHVFIVVFSKDYASSTWCLKELRKIFDGAEETGRSVLPIFYDVTPSEVRKQSGKFGKAFAEHEERFKDDLEMVKKWREALKAIGNRSGWDVQNKPQHEEIEKIVEEVMNLLGHNQIWSFSGDLVDMDSRVKQLEELLDLSANDVVRVVGIWGMSGVGKTTLVKALFGKISPQYDARCFIDDLSKTCGDFGATSAQKQLLCQTLNQANIEIHNLSHGIMLIRTRLRRLKTLIVLDNVDRVEQLENLALHREYPGERSRIIIISKNMHILTNYGVDEVYNVQLLNKDKALQLLCKKAFKSDDIVKGYEEVTSDVLKYVKGLPLAIKVLGSFLFDRDVFEWRSALTRMKENLSKDIMNVLRISFDGLETM* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1100 431 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 429 - -
Gso12g1100 431 SMART till_3 10 150 IPR000157 GO:0007165
Gso12g1100 431 PRINTS Disease resistance protein signature 211 226 - -
Gso12g1100 431 PRINTS Disease resistance protein signature 287 301 - -
Gso12g1100 431 PRINTS Disease resistance protein signature 380 394 - -
Gso12g1100 431 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
Gso12g1100 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 429 IPR027417 -
Gso12g1100 431 Pfam NB-ARC domain 194 415 IPR002182 GO:0043531
Gso12g1100 431 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 429 IPR044974 GO:0006952
Gso12g1100 431 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Gso12g1100 431 SMART AAA_5 208 347 IPR003593 -
Gso12g1100 431 Gene3D - 4 177 IPR035897 -
Gso12g1100 431 Gene3D - 178 339 IPR027417 -
Gso12g1100 431 Gene3D - 345 429 IPR042197 -
Gso12g1100 431 Pfam TIR domain 10 173 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1100 Gso-Chr12 14981318 14982907 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1100 6 429 WRKY Transcription Factor Family AT4G12020 27.400 1.59e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1100 - - gmx:100819678 788.489