Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1098 ATGGCTTCCAACAGCATGGTCCCATGCAGCACTTCACCAGCGATGATAAAGAAATATGAAGTGTTTGTGAGCTTCAGAGGTAAGGACACACGCAACAATTTTACTGATCATCTTTTTGGTGCTCTCCAAAGGAAGGGCATTCTTACCTTTAGGGATGACACAAAGCTGAAGAAAGGGGAGCGTATACTCTCTAGCCTCATGCAAGCAATTGAGGGGTCTCAGATTTTTGTTATTGTGTTCTCAAAGAACTATGCTTCTTCAACATGGTGCTTGCGAGAACTTGAAAAGATTCTTGATTGTGTTAGAGTCCCCGGAAAACGTGTTCTTCCTATTTTTTATGATGTTGATCCATCTGAGGTTCGAAAACAAACGGGAGATTACGGGAAAGCCTTCACCAAACACGAAGAGAGATTCAAAGATGATGTAGAGAAGATGGAGGAAGTGAAAAGATGGAGAAGAGCTCTCACACAAGTAGCCAATTTCTCTGGTTGGGATATGATGAATAAGTCACAATATGATGAGATTGAAAAAATTGTTCAAGAGATACTAAGTAAATTGGGTCGCAATTTTTCAAGTCTTCCAAATGATCTAGTTGGGATGGAATCTCCGGTTGAAGAACTAGAAAAACTTATACTTTTGGACCCAGTTGAAGATGTTCGCATTGTAGGAATTTTTGGGATGGGCGGAATAGGAAAGACAACTCTCGCTTCTGTTTTATATCATAGAATCTCTCATCAGTATGATGCCTGCTGTTTTATTGATAATGTAAGCAAAGTTTATAGAGATTGCGGTCCAACTGGTGTGGCAAAGCAGCTGCTCCATCAAACTCTGAATGAAGAAAACCTTCAGATATGCAATCTTCATAACGCAGCTAATTTGATACAAAGTAGGCTACGTTATGTAAAGACACTTATAGTTCTTGATAATGTTGATGAAGTCAAACAACAAGAAAAATTAGTTTTGAATCGTGAATGGTTAGGTGCAGGGAGTAGAATCATCATAATTTCTAGAGATATGCAAAACTTAAAAGAGTATGGAGTGACTTCAGTCTACAAAGTTCAACTCTTAAATGGTGCTGATTCTCTTAAATTGTTTTGTAAAAAGGCTTTCAATTGTGATGATATTGTGGGAGGTTACAAAGAGTTGACATATGATGTGTTAAAATATGCTAATAGCCTACCACTAGCAATCAAAGTACTAGGTTCATTTTTGTGTGGTCGAAGTGTCTCAGAGTGGAGAAGTGCCTTAGTTAGACTGAAAGAGAATCCAAACAAAGATATCTTGGATGTGCTTCAAATAAGTTATGATGGGCTACAGGAATTGGAAAAGCAAATATTTTTAGATATTGCTTGTTTCTTCAGCGGGTACGAGGAGTTATATGTGAAGAAAGTTCTAGATTGTTGTGGATTTCATGCTGAAATTGGAATAAGAGTTCTCCTTGATAAATCACTCATAGACAATTCACATGGATTCATTGAAATGCATGATTTGTTGAAAGTTTTGGGCAGAAAAATTGTTAAAGGCAATTCACCCAATGAGCCACGAAAGTGGAGCAGGTTGTGGCTCCCTAAGGATTTCTATGATATGTCGAAGGCAACGGAAACTACAAACAATGAAGCCATTGTTTTAGACATGTCCAGAGAGATGGGAATATTGATGACTATTGAAGCTGAAGCATTGTCCAAAATGAGTAACCTTAGGTTACTCATACTCCATGATGTGAAGTTTATGGGAAACCTTGATTGTCTCTCCAATAAACTACAATTTCTCCAGTGGTTTAAGTATCCTTTCTCCAATTTACCATCAAGTTTTCAGCCAGACAAACTGGTAGAATTGATCTTGCAACATAGCAACATCAAAAAACTATGGAAAGGCATAAAGTATCTGCCAAATTTAAGAGCTTTGGATCTCAGTGATTCCAAGAATCTTATTAAGGTTCCAGACTTTAGAGGGGTCCCTAATCTTGAGTGGATAATTCTTGAAGGATGCACAAAACTTGCATGGATCCATCCATCGGTTGGTCTTTTAAGAAAGCTTGCTTTCCTGAATTTGAAAAACTGCAAAAATCTAGTAAGTCTTCCCAACAATATTTTGGGTCTAAGTTCTCTGGAATATCTAAATATCTCTGGTTGTCCAAAAATATTTAGTAATCAACTGTTAGAGAACCCAATAAATGAGGAGTATTCCATGATTCCTAATATCAGGGAAACTGCCATGCAATCCCAGTCAACATCCTCCTCCATCATCAAGAGATTCATACCTTTCCATTTCTCGTACTCTAGAGGGTCTAAAAATTCAGGTGGTTGTTTGTTGCCTTCCTTGCCTAGCTTCTCTTGTTTGCATGACCTTGATCTAAGTTTCTGCAATCTAAGTCAAATCCCTGATGCTATTGGATCCATCCTTTCTTTAGAAACCTTAAATTTAGGGGGAAACAAATTTGTTAGCCTCCCCAGTACCATCAACAAGCTTTCCAAACTTGTACATTTAAACTTGGAGCATTGCAAGCAATTAAGATATTTGCCTGAGATGCCAACACCTACTGCCTTGCCAGTAATAAGAGGAATCTATTCTTTTGCTCATTACGGAAGAGGATTAATTATTTTCAACTGTCCTAAAATTGTTGATATTGAACGTTGTCGTGGCATGGCATTTTCTTGGTTGTTACAAATCCTGCAGGTGAGCCAAGAGTCAGCTACCCCTATTGGTTGGATTGATATTATTGTTCCTGGAAATCAAATACCAAGATGGTTCAACAATCGATGTGTTGGTAATTCAATAAGCCTAGACCCGTCTCCCATTATGCTTGACAATAACTGGATTGGCATTGCTTGCAGCGTGGTATTTGATGATCCAACTAGTTTGGATAATGATTGGAAATCCTCTATAAGCATTGGTTTTGAGACAAAATCTTATTCATCCCGGGGTTCACCGCTCTATATTCCAATACTTCTTGATAGGAATCTTGTAACGGTTAAATTGCATCACTTGTGGTTACTCTATTTGACTAGGGGAGAATTTTTTTCCTATTTTAAAATAGAAAAAATGCTTGATCTTTATGGCATCAAAATGCATGCCATGATCGACAACTCTCAAGGTTTGCACTTGGAGGTGTGCAGTTGTGGATATCAGTGGGTATTTGAGGAGGATCTGCAAAACTTAAACCCAACAATAATGCGTAGAGGATACAGCAACATTCCAGTTGATGATGATTTTGTGAACGGCGGTTCAATTCTTTCATTAGAAGCTGGAAGCTAG 3255 0.3803 MASNSMVPCSTSPAMIKKYEVFVSFRGKDTRNNFTDHLFGALQRKGILTFRDDTKLKKGERILSSLMQAIEGSQIFVIVFSKNYASSTWCLRELEKILDCVRVPGKRVLPIFYDVDPSEVRKQTGDYGKAFTKHEERFKDDVEKMEEVKRWRRALTQVANFSGWDMMNKSQYDEIEKIVQEILSKLGRNFSSLPNDLVGMESPVEELEKLILLDPVEDVRIVGIFGMGGIGKTTLASVLYHRISHQYDACCFIDNVSKVYRDCGPTGVAKQLLHQTLNEENLQICNLHNAANLIQSRLRYVKTLIVLDNVDEVKQQEKLVLNREWLGAGSRIIIISRDMQNLKEYGVTSVYKVQLLNGADSLKLFCKKAFNCDDIVGGYKELTYDVLKYANSLPLAIKVLGSFLCGRSVSEWRSALVRLKENPNKDILDVLQISYDGLQELEKQIFLDIACFFSGYEELYVKKVLDCCGFHAEIGIRVLLDKSLIDNSHGFIEMHDLLKVLGRKIVKGNSPNEPRKWSRLWLPKDFYDMSKATETTNNEAIVLDMSREMGILMTIEAEALSKMSNLRLLILHDVKFMGNLDCLSNKLQFLQWFKYPFSNLPSSFQPDKLVELILQHSNIKKLWKGIKYLPNLRALDLSDSKNLIKVPDFRGVPNLEWIILEGCTKLAWIHPSVGLLRKLAFLNLKNCKNLVSLPNNILGLSSLEYLNISGCPKIFSNQLLENPINEEYSMIPNIRETAMQSQSTSSSIIKRFIPFHFSYSRGSKNSGGCLLPSLPSFSCLHDLDLSFCNLSQIPDAIGSILSLETLNLGGNKFVSLPSTINKLSKLVHLNLEHCKQLRYLPEMPTPTALPVIRGIYSFAHYGRGLIIFNCPKIVDIERCRGMAFSWLLQILQVSQESATPIGWIDIIVPGNQIPRWFNNRCVGNSISLDPSPIMLDNNWIGIACSVVFDDPTSLDNDWKSSISIGFETKSYSSRGSPLYIPILLDRNLVTVKLHHLWLLYLTRGEFFSYFKIEKMLDLYGIKMHAMIDNSQGLHLEVCSCGYQWVFEEDLQNLNPTIMRRGYSNIPVDDDFVNGGSILSLEAGS* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1098 1084 Pfam C-JID domain 908 1050 IPR045344 -
Gso12g1098 1084 SMART till_3 18 161 IPR000157 GO:0007165
Gso12g1098 1084 Gene3D - 15 187 IPR035897 -
Gso12g1098 1084 Pfam NB-ARC domain 216 425 IPR002182 GO:0043531
Gso12g1098 1084 PRINTS Disease resistance protein signature 221 236 - -
Gso12g1098 1084 PRINTS Disease resistance protein signature 297 311 - -
Gso12g1098 1084 PRINTS Disease resistance protein signature 390 404 - -
Gso12g1098 1084 PRINTS Disease resistance protein signature 627 643 - -
Gso12g1098 1084 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Gso12g1098 1084 ProSiteProfiles Leucine-rich repeat profile. 802 823 IPR001611 GO:0005515
Gso12g1098 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 449 IPR027417 -
Gso12g1098 1084 SUPERFAMILY L domain-like 543 874 - -
Gso12g1098 1084 SUPERFAMILY "Winged helix" DNA-binding domain 426 528 IPR036390 -
Gso12g1098 1084 Gene3D - 356 439 IPR042197 -
Gso12g1098 1084 Gene3D Ribonuclease Inhibitor 723 880 IPR032675 -
Gso12g1098 1084 Gene3D Ribonuclease Inhibitor 522 722 IPR032675 -
Gso12g1098 1084 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 164 IPR035897 -
Gso12g1098 1084 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Gso12g1098 1084 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 194 1054 - -
Gso12g1098 1084 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 194 1054 IPR044974 GO:0006952
Gso12g1098 1084 Pfam TIR domain 18 192 IPR000157 GO:0007165
Gso12g1098 1084 Gene3D - 188 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1098 Gso-Chr12 14949797 14960685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1098 17 829 WRKY Transcription Factor Family AT4G12020 31.629 8.96e-91 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1098 - - gmx:100820213 2163.65