Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1096 ATGGCTTGCTCTTCATCACACGCGAAGAATTTTGATGTGTTTGTGAGCTTTAGAGGTCTGGATACTCGTAATAGTTTCACTGATCATCTTTTTGCTGCTCTTCAAAGGAAAGGCATTGTTGCTTTCAGGGATAACCAAAATATCAACAAAGGGGAACTCTTGGAGCCTGAGCTCTTGCAGGCAATCGAAGGATCACATGTTTTCATTGTTGTCTTCTCAAAAGACTATGCATCATCCACATGGTGCTTGAAAGAGCTGAGAAAGATTTTTGATAGGGTTGAAGAAACAGGGCGAAGTGTACTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGGAAACAGAGTGGAAAGTTTGGAAAAGCTTTTGCTGAATACGAAGAAAGGTTCAAAGATGATTTGGAAATGGTAAATAAATGGAGGAAAGCTCTCAAAGCAATTGGCAATCGTAGTGGTTGGGATGTACAAAATAAGCCAGAACATGAAGAAATTGAAAAAATTGTTGAAGAAGTAATGAACCTACTGGGTCATAATCAAATTTGGAGTTTCAGTGGTGATTTAGTTGATATGGACTCTCGTGTGAAACAATTGGAAGAGCTTCTAGATTTGAGCGCAAATGATGTTGTTCGCGTTGTGGGAATTTGGGGGATGAGTGGAGTAGGAAAGACAACACTTGTTACTGCTTTGTTTGGTAAAATCTCTCCTCAATATGATGCTCGTTGTTTTATTGATGATTTAAACAAATATTGTGGGGATTTTGGTGCAACAAGTGCACAAAAACAACTTCTTTGTCAAGCTCTAAATCAAGGAAATATGGAGATACACAATCTTTCCCATGGAACCATGTTGATAAGAACTAGGCTACGTCGCTTAAAGACACTTATTGTTCTTGATAATGTTGATCAGGTTGAACAATTAGAGAATTTGGCTTTGCATCCTGAATATCTAGGTGAAGGGAGTAGAATCATCATAATCTCTAAAAATATGCATATCTTAAAAAATTATGGAGTATATAAAGTTTACAATGTTCAACTCCTTAAGAAGGATAAGGCTCTTCAATTACTTTGCAAAAAAGCTTTCAAATCCGATGATATTGAGAAAGGGTATGAAGAGGTAACATATGATGTACTGAAGTATGTCAATGGTCTTCCACTAGCAATCAAAGTATTGGGCTCATTTTTGTTTGATCGAGATGTTTTTGAGTGGAGAAGTGCATTAACTAGAATGAAAGAAAATCCAAGTAAAGATATCATGGATGTGTTGCGAATAAGTTTTGATGGATTGGAGACAATGGAAAAAGAAATATTTCTAGATATTGTTTGTTTCTTTTCAAGTGATCAATTCCAGGATTATGACCGGCGGTCTATACCTCCTGAGAAAATTCTAGGCTATCGGGGATTTTATCCCAAAATTGGTATGAAAGTTCTAGTTGAAAAATCACTCATAAGTTTTGATCGTTATAGTAATATTCAAATGCATGACTTGTTGAAAGAGTTGGGCAAGATTATTATCCGAGAAAAGGCACCCAAGCAACCTAGAAAGTGGAGCAGGTTATGGGACTACAAGGATCTCCAAAAAGTTATGATAGAAAATAAGGAGGCCAAAAATCTTGAAGCCATATGTATTTGTAATGAAAAATACCAAGATGAGTTTCTACAACAAACAATGAAAGTAGATGCTCTATCAAAAATGATTCATCTTAAGTTACTCATGCTTAAGAATGTGAATTTTTCAGGAATTCTCAATTATCTTTCTAATGAATTGAGATATTTATACTGGGATAACTATCCTTTCTTGTCTATGCCATCAAGTTTTCATCCCGATCAACTTGTCGAATTGATTTTGCCTTATAGCAATATCAAACAATTATGGAAAGACACAAAGCATCTGCCGAATTTGAAAGATTTAGATCTCAGCCACTCCCAAAATCTTATTGAGATGCCAGACTTAAGTGGAGTCCCACATCTTAGGAATCTCAATCTCCAAGGATGTACAAAAATTGTACGCATCGATCCATCCATTGGTACCCTAAGAGAGCTTGATTCTCTGAATTTGAGGAATTGTATAAATCTTTTCCTTAATCTGAATATCATTTTTGGGCTTAGTTCTCTTAAGTACCTTAATCTCTCAGGCTGTTCAAAATTACTTAATAATAGGCTGTTACAGAAACCAAGGGAGACAGAACATATGGAAAAAATTGATGAAAATAGAAGTTCCATCCAATTATCAACATCCTCTGTATACGAAATGCTAATGCTGCCTTTCTATATTTTCTCCTCTTGGAAACAAGTAGATTCACTGGGTTTGTTGGTTCCTTATTTATCTCGTTTCCCACGTTTGTTTGTTCTTGATCTGAGCTTCTGCAATCTACTTCAAATCCCTGATGCTATTGGGAACTTACATTCTTTAGTAATATTAAATTTGGGGGGAAACAAATTTGTGATACTACCTAATACCATTAAGCAACTTTCCGAACTTCGATCTCTAAACTTAGAGCACTGCAAGCAGCTGAAATATTTGCCCGAGCTTCCAACACCAAAAAAGAGAAAAAATCACAAATATTACGGGGAATTAAACACTTTCAATTGCCCCAATTTGAGTGAAATGGAACTTATTTATCGCATGGTTTTTTCTTGGATGACACAAATCTTTGAGGTACACTGGCAATCCTCTCTTTCCTTTAATAGGCTTGATATTGTTATTCCTGGAACTGAAATTCCAAGGTGGTTCAGTAAACAAAATGAGGGTGATTCAATAAGCATGGACCCGTCTCCTGTTATGGAAGACCCAAATTGGATAGGTGTTGCCTGTTGTGCATTATTAGTGGCACATCATGATCCGTCTAATATTGAATGA 2856 0.3624 MACSSSHAKNFDVFVSFRGLDTRNSFTDHLFAALQRKGIVAFRDNQNINKGELLEPELLQAIEGSHVFIVVFSKDYASSTWCLKELRKIFDRVEETGRSVLPIFYDVTPSEVRKQSGKFGKAFAEYEERFKDDLEMVNKWRKALKAIGNRSGWDVQNKPEHEEIEKIVEEVMNLLGHNQIWSFSGDLVDMDSRVKQLEELLDLSANDVVRVVGIWGMSGVGKTTLVTALFGKISPQYDARCFIDDLNKYCGDFGATSAQKQLLCQALNQGNMEIHNLSHGTMLIRTRLRRLKTLIVLDNVDQVEQLENLALHPEYLGEGSRIIIISKNMHILKNYGVYKVYNVQLLKKDKALQLLCKKAFKSDDIEKGYEEVTYDVLKYVNGLPLAIKVLGSFLFDRDVFEWRSALTRMKENPSKDIMDVLRISFDGLETMEKEIFLDIVCFFSSDQFQDYDRRSIPPEKILGYRGFYPKIGMKVLVEKSLISFDRYSNIQMHDLLKELGKIIIREKAPKQPRKWSRLWDYKDLQKVMIENKEAKNLEAICICNEKYQDEFLQQTMKVDALSKMIHLKLLMLKNVNFSGILNYLSNELRYLYWDNYPFLSMPSSFHPDQLVELILPYSNIKQLWKDTKHLPNLKDLDLSHSQNLIEMPDLSGVPHLRNLNLQGCTKIVRIDPSIGTLRELDSLNLRNCINLFLNLNIIFGLSSLKYLNLSGCSKLLNNRLLQKPRETEHMEKIDENRSSIQLSTSSVYEMLMLPFYIFSSWKQVDSLGLLVPYLSRFPRLFVLDLSFCNLLQIPDAIGNLHSLVILNLGGNKFVILPNTIKQLSELRSLNLEHCKQLKYLPELPTPKKRKNHKYYGELNTFNCPNLSEMELIYRMVFSWMTQIFEVHWQSSLSFNRLDIVIPGTEIPRWFSKQNEGDSISMDPSPVMEDPNWIGVACCALLVAHHDPSNIE* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1096 951 SUPERFAMILY L domain-like 557 872 - -
Gso12g1096 951 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Gso12g1096 951 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Gso12g1096 951 Pfam Leucine rich repeat 778 835 IPR001611 GO:0005515
Gso12g1096 951 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
Gso12g1096 951 SMART till_3 10 150 IPR000157 GO:0007165
Gso12g1096 951 Pfam TIR domain 10 173 IPR000157 GO:0007165
Gso12g1096 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 439 IPR027417 -
Gso12g1096 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 921 IPR044974 GO:0006952
Gso12g1096 951 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 921 - -
Gso12g1096 951 Gene3D - 4 176 IPR035897 -
Gso12g1096 951 Gene3D Ribonuclease Inhibitor 485 724 IPR032675 -
Gso12g1096 951 PRINTS Disease resistance protein signature 211 226 - -
Gso12g1096 951 PRINTS Disease resistance protein signature 287 301 - -
Gso12g1096 951 PRINTS Disease resistance protein signature 380 394 - -
Gso12g1096 951 PRINTS Disease resistance protein signature 628 644 - -
Gso12g1096 951 Gene3D - 345 429 IPR042197 -
Gso12g1096 951 Pfam NB-ARC domain 194 415 IPR002182 GO:0043531
Gso12g1096 951 SUPERFAMILY "Winged helix" DNA-binding domain 416 527 IPR036390 -
Gso12g1096 951 Gene3D Ribonuclease Inhibitor 725 914 IPR032675 -
Gso12g1096 951 Gene3D - 177 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1096 Gso-Chr12 14940276 14944047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1096 6 829 WRKY Transcription Factor Family AT4G12020 29.800 7.52e-85 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1096 - - gmx:100819678 1855.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1096 12 14940276 14944047 Gso12g1096 12 14940276 14944047 ECH