Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1081 ATGATGTCCAGGTCGTATACGAATCTTTTAGATTTGGCCTCTGGGAATTTCCCGGCAATGGGGGGGAGGGAGACTAGGGAGCGGAAACGGATGCCGAGAGTTATGAGTGTCCCGGGGTTTCTCACTGAGGTAGATGATGATCAGGCAGTTAGTGTTTCCTCTGATAATCCATCAACTGTTACTACGGATAGAATGATCATTGTGGCTAACCAGCTACCGTTGAAGGCAAAGCGAAAAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGATTCATTGCTTTTACAGCTTAAGGATGGACTCCCGGATGACATGGAGGTTCTTTATGTTGGTTCATTACGCGTTGACATTGATCCAGCTGAACAGGATGATGTATCACAGTATTTATTGGATAAATTCAAATGTGTGCCGACTTTTTTACCCGCTGACGTTTTGGCAAAATTTTATGACGGCTTCTGTAAACGGCAGTTATGGCCACTTTTTCATTATATGTTACCATTTTCAACAGATAAAAGCCACCGATTTGATCGTTCTTTGTGGGAAGCTTACGTGCTGGCAAACAAGCTTTTTTTTCAGAAGGTAGTTGAAATAATAAACCCAGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGCTGCCAACTTTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAGATATACAGGACTCTTCCTGTCAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCAAAGAGGGGTTATTTAGGATTGGAGTATTATGGAAGGACAATCAGTATTAAGATTATGCCTGTTGGGATTCACATGGGTCGAATTGAGTCAGTTATGAGAATGGCAGATGAGGAATGCAAGGTAAGGGAGCTCAAACAGAAATTTGAAGGAAAAACCATCTTGCTTGGTATTGATGATATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAGACAGCATCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATACATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCAACAGGATCAACAGAGTGTTTGGGAGACCTGGTTATGAACCTATTGTTTTTATTGATAGAGCAGTTCCTATTGCTGAAAAAGTTGCTTATTACTGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAGTATATTGCATGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAATGACCCTAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCAATCCGTGTCAATCCATGGAATGTTGAAGCAACTTCAGAGGCAATGAATGAGGCCATCTCAACTGGTGATGGAGAGAAACAGTTGCGGCACGAGAAGCATTACCGTTATGTCAGCACTCATGATGTGGCTTACTGGTCACGTAGTTTCTTGCAAGACATGGAGCGGGCTTGCACAGACCTTCTAAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTCTCAATCGATGCTATGGTTTCAGCTTACAAGAGGGCAAAAAATAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCTTGTCTATTTTGGAATCACTTAGTGAAGACCCCAAAAATGTTGTTTTCATTGTTAGTGGACGGGGGAGGAATAGCTTAAGTGACTGGTTTAATTCCTGTGAAAAACTTGGAATTGCTGCAGAACATGGGTACTTCTTGAGATGGTCCCACAATCGAGAATGGGAAAATTGTGGTAAGAGCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACTCTATACAGAGGCGACTGATGGTTCCTCTATTGAAAGAAAAGAAAGTGCTTTGGTCTGGCAATACCGTGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTAGTCGCCGAGAAGATATTTTCGTCAATGGACGGGAAGGGCAAACAGGCCGACTTTGTGTTGTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAGATAGTTAGTAGTGCCATCTCAAGGAATATTCTTGCCACCAATGCTTCTGTGTTTGCTTGCACGGTTGGACAAAAACCAAGCAAAGCAAAGTATTATTTGGATGATACAACTGAGGTAACAAGCATGTTGGAATCTTTGGCTGAAGAATCAGATGCTTCACCCTACATAGAAGAAACTGGAGATTCCTCTCGGAGGCAAGTGTGA 2589 0.4214 MMSRSYTNLLDLASGNFPAMGGRETRERKRMPRVMSVPGFLTEVDDDQAVSVSSDNPSTVTTDRMIIVANQLPLKAKRKEDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKVRELKQKFEGKTILLGIDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIHAEIQESCNRINRVFGRPGYEPIVFIDRAVPIAEKVAYYCIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVNDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISTGDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKNRAILLDYDGTVMPQNSINKSPSKEVLSILESLSEDPKNVVFIVSGRGRNSLSDWFNSCEKLGIAAEHGYFLRWSHNREWENCGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAEKIFSSMDGKGKQADFVLCVGDDRSDEDMFEIVSSAISRNILATNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDASPYIEETGDSSRRQV* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1081 862 Pfam Glycosyltransferase family 20 64 547 IPR001830 GO:0003824|GO:0005992
Gso12g1081 862 CDD GT20_TPS 64 547 IPR001830 GO:0003824|GO:0005992
Gso12g1081 862 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 596 800 IPR006379 -
Gso12g1081 862 MobiDBLite consensus disorder prediction 843 862 - -
Gso12g1081 862 Gene3D - 722 852 IPR023214 -
Gso12g1081 862 Gene3D - 593 696 IPR023214 -
Gso12g1081 862 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 855 - -
Gso12g1081 862 Gene3D Glycogen Phosphorylase B; 318 531 - -
Gso12g1081 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 855 IPR001830 GO:0003824|GO:0005992
Gso12g1081 862 Pfam Trehalose-phosphatase 597 831 IPR003337 GO:0003824|GO:0005992
Gso12g1081 862 SUPERFAMILY HAD-like 594 842 IPR036412 -
Gso12g1081 862 CDD HAD_TPP 595 834 - -
Gso12g1081 862 TIGRFAM T6PP: trehalose-phosphatase 591 842 IPR003337 GO:0003824|GO:0005992
Gso12g1081 862 Gene3D Glycogen Phosphorylase B; 57 317 - -
Gso12g1081 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 64 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1081 Gso-Chr12 14505986 14511032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1081 1 850 Trehalose Biosynthesis Gene Families AT1G06410 78.471 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1081 K16055 - gmx:100811463 1733