Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1008 ATGGATGTCTTCGATAACGATCACGACCATGACGAACCATTTGTTCGATACCACAGTAACGTTAACAGAACAATACTGTACGTGTCCATGGTTTCCTTCATAACAGTCTTGTTTCTCGTCTTCGCACTCTACCTCTACGCCCGGTGCGTCCTAAGGGGCCGGTCCCGCAACCGCGCCGCCATTCGACGTCTCACCATCGCCGCGCTTCACGTCTCTGACCTCGACGCAGCCGCCGCCGCACACCGACACGCCGAACCACCCAACGCGGGCCTCGACCCTGCCATCATAGCGTCGCTTCCAACCTTCGCCTCCAGAACGAAGGTTCTAGAAAATGGTGGTGATGGTGGCGGAGGAGGGGCCACCGTGGTGGAGTGTGCTGTGTGCTTGAGTGCTCTAGAAGGTGAAGAAAAGGCCAAGTTGCTTCCCAACTGCAACCACTTTTTTCACGTGGATTGCATTGATAAGTGGCTGGGTTCCCACTCCACGTGTCCTATTTGTCGAGCCGAGGTGAAGCCGCAGCTTCAACCACAGCATCGTGAGGGTCCTGTGGGTCTTTCTCTTCACAGTGCACGTACACTGCATAGTAGGGTGGAGGGTGATGATGATGACAACAACAATAACGATGAATCATCAAAAATTAATGATTCTAATTCACGGTTGAGCTCGTTTAGGAGGATTCTCAGTAGGCAAAGATCTTCAAGAAGAGTCCAACCGTCTGGCCACGATGATGAGGATGGTGGTGTTGATCAAGATTTGGAGAGACATGATGAACATAGAAGGGAGGTATAG 789 0.5209 MDVFDNDHDHDEPFVRYHSNVNRTILYVSMVSFITVLFLVFALYLYARCVLRGRSRNRAAIRRLTIAALHVSDLDAAAAAHRHAEPPNAGLDPAIIASLPTFASRTKVLENGGDGGGGGATVVECAVCLSALEGEEKAKLLPNCNHFFHVDCIDKWLGSHSTCPICRAEVKPQLQPQHREGPVGLSLHSARTLHSRVEGDDDDNNNNDESSKINDSNSRLSSFRRILSRQRSSRRVQPSGHDDEDGGVDQDLERHDEHRREV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1008 262 MobiDBLite consensus disorder prediction 196 262 - -
Gso12g1008 262 SUPERFAMILY RING/U-box 124 175 - -
Gso12g1008 262 CDD RING-H2_PA-TM-RING 124 167 - -
Gso12g1008 262 MobiDBLite consensus disorder prediction 235 262 - -
Gso12g1008 262 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Gso12g1008 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 174 IPR013083 -
Gso12g1008 262 PANTHER RING FINGER DOMAIN-CONTAINING 7 254 - -
Gso12g1008 262 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 7 254 - -
Gso12g1008 262 SMART ring_2 125 166 IPR001841 -
Gso12g1008 262 MobiDBLite consensus disorder prediction 210 227 - -
Gso12g1008 262 Pfam Ring finger domain 124 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1008 Gso-Chr12 12916713 12917970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1008 4 255 C3H Transcription Factor Family AT2G42360 40.625 2.93e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1008 K19038 - gmx:100811308 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1008 12 12916713 12917970 Gso12g1008 12 12916713 12917970 ECH