Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1005 ATGGCTCAATTGCCACCAAAAATTCCAAACATGACACCCAATTGGCCAGACTTTTCTTCTCTTCACCAAAAGATGCCTTCCCTCCAAACCACGTCATCAAACCAAAACCCTTCATGGGTGGATGAGATTCTTGAGTTCTCAGTGGCGAGGCGCGGGGCCCCCCGGCGGTCGGTGAGCGACTCCGTCACTTTCCTGGAGGCACCATTGCTGGACCACCATCATTGCAAAGGTGGCAGTGTTGTTGGTGGTGGCGGCGGCAACAACGAGTTCGAGAGGTTCGATGATGAACAATTCATGTCCATGTTTAGTGATGAAGCTTCAGGGAACAATAACAATAATAATACCATGATGGCACACACGTTGTCCTCCTCCAACCCTTCTACACCCTCTGATCACAACAGCATCAATGATGAGAAGGAAATGGAAAATAAGGAAGAGGAAGAGAAGAAGCAATTGAAGAATGAATCGGAGGATGAGGATAAAAGCCAATGCAAACAAGAAATCACACAACTTCCCAACAATGATGACAGTAATAATACTAGTAATGCAAATGCAACATGTTCCAGTGAAAAAATCACAGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGGCAATCTGCGCAAAGATCAAGAGTGAGGAAGCTGCAATACATATCTGAGCTTGAGCGAAGTGTGACTTCATTACAGGCCGAAGTTTCAGTGTTGTCTCCACGGGCTGCATTTTTGGATCATCAACGTTTGCTTCTGAATGTCGACAACAGTGCTTTGAAGCAAAGAATCGCCGCGCTGGCCCAAGACAAGATTTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTTTATCACCAACAAAACATAAAGAAGATGGACAATAATGCTGCAGCGTCACCACCATCCCAGTCCCCATCTCCATCACCAAAACCACGATGTGAAACTCACACTGAAAAGGAACAGCTTATCAATGTTTGA 993 0.4552 MAQLPPKIPNMTPNWPDFSSLHQKMPSLQTTSSNQNPSWVDEILEFSVARRGAPRRSVSDSVTFLEAPLLDHHHCKGGSVVGGGGGNNEFERFDDEQFMSMFSDEASGNNNNNNTMMAHTLSSSNPSTPSDHNSINDEKEMENKEEEEKKQLKNESEDEDKSQCKQEITQLPNNDDSNNTSNANATCSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRAAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMDNNAAASPPSQSPSPSPKPRCETHTEKEQLINV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1005 330 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g1005 330 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 327 - -
Gso12g1005 330 Coils Coil 275 295 - -
Gso12g1005 330 MobiDBLite consensus disorder prediction 166 191 - -
Gso12g1005 330 Pfam bZIP transcription factor 196 239 IPR004827 GO:0003700|GO:0006355
Gso12g1005 330 MobiDBLite consensus disorder prediction 133 165 - -
Gso12g1005 330 MobiDBLite consensus disorder prediction 292 306 - -
Gso12g1005 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 246 IPR004827 GO:0003700|GO:0006355
Gso12g1005 330 Coils Coil 135 162 - -
Gso12g1005 330 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Gso12g1005 330 MobiDBLite consensus disorder prediction 103 132 - -
Gso12g1005 330 CDD bZIP_plant_RF2 197 247 IPR044759 GO:0003700|GO:0006355
Gso12g1005 330 MobiDBLite consensus disorder prediction 103 191 - -
Gso12g1005 330 PANTHER BASIC LEUCINE ZIPPER 34 1 327 - -
Gso12g1005 330 MobiDBLite consensus disorder prediction 289 330 - -
Gso12g1005 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700|GO:0006355
Gso12g1005 330 Gene3D - 195 294 - -
Gso12g1005 330 SUPERFAMILY Leucine zipper domain 196 250 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1005 Gso-Chr12 12799818 12803553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1005 1 273 bZIP Transcription Factor Family AT3G58120 56.250 8.32e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g1005 bZIP_1 4.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1005 - - gmx:100101873 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1005 12 12799818 12803553 Gso12g1005 12 12799818 12803553 ECH