Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1002 ATGCATCCGGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAACTGTATATTGGAACCTTACTTTCCATCGAATAGAAGTCGTGAGTTCTATGCTGTGCACAAGGTTTTTGGTGTTAGCAACATAACCAAGTTGGTAAAGAATGCTAAAGAGGAAGATAGAAGAAAAGTTGTGGACTCATTGATATGGGAAGCATGTTGTAGGCAAAGGGACCCTATACAAGGTCCTTATGGAGAGTACACAAAAGTTTACAATGAGTATAAGAAAGTGTTGGATGAAATTAAGAGATTCAGAAGCCAAAACCAACTTTTGCAAATTCCCTCTCTAGGGTTTAAGTCTGTACAAGATTTGATTGCTTGCAATGGAACCAAAGGGGAACACAAAGCGTCAGTTAATAATGCATCAAATTATCTTCATGGGAAAAAGAATGGTATTATTGATACTAATATTTATAATACTTATTGTTCGAATTATTTGCTAGAGTTTCAGAATATAAGGCCAGAAGTTGTCATACCGTTTCAGCAACACTCTCAACCATACTACATTACAGGTATCAATCTTTGA 573 0.3665 MHPACAACKHQRKKCSENCILEPYFPSNRSREFYAVHKVFGVSNITKLVKNAKEEDRRKVVDSLIWEACCRQRDPIQGPYGEYTKVYNEYKKVLDEIKRFRSQNQLLQIPSLGFKSVQDLIACNGTKGEHKASVNNASNYLHGKKNGIIDTNIYNTYCSNYLLEFQNIRPEVVIPFQQHSQPYYITGINL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1002 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 148 - -
Gso12g1002 190 Pfam Lateral organ boundaries (LOB) domain 4 99 IPR004883 -
Gso12g1002 190 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Gso12g1002 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1002 Gso-Chr12 12781164 12781736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1002 2 136 AS2 family AT1G06280 45.578 1.30e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso12g1002 LOB 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1002 - - gmx:100809173 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1002 12 12781164 12781736 Gso12g1002 12 12781164 12781736 ECH