Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1000 ATGGCGGGTCCCATTCTTCGTTCTCTCTGGTCCTCCACCAGGAAATCCTTCTCCTCCTCCTTCTCTTCTTCTTCGTCTCCCTCTGCTCCGTTTTCCCACTCGCGCTTCTTCTCACGCACCTTCGCCGCCGCTCCCGCCGCCGCCACCACCGCCACCACCGCCTCCTCCCTCGACCCCAGCCACCTCCGAAATGTGGCGGTGATCGCCCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGGTCACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCCGGACACGCTGATTTTGGTGGTGAGGTTGAGCGTGTTGTTGGTATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAGACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGTCCTGCAGTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTTGGTGCTACTGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCTACCACATTTACCAAGGATCCTCCTGCTGATGCCAGAAATATGTCACAGTTGCTTGATGCCGTTGTAAGACATGTTCCACCACCAAATGCAAGCATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAAGATTTCTATCTTGGGCGAATTTTGACCGGACGCATATACTCTGGGATTGTTCGTGTTGGTGACAGGGTTCATGGATTACGTAATAAAGATTCTGGGGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATATCAATTGCTGGCCTGTCAAGTCCAGCAATAGGCCATACAGTTGCAACTGTGGAGGTTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCATTGGCTGGTCGTGATGGCTCTCATTTGACTGGGGGGAGAATTGGTGACCGATTGATGGCTGAAGCTGAAACCAACCTCGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAAGGGTTTGAGTTATCTGTCTCACCACCCAAAGTAATGTATAAAACTGAAAACGGTCAGAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACAGACATGGGTCCTGTCTCAGGAACTGTTGGTCGAACTAGATTGTGTTTGACTTGTCCATCAAGGGGGCTGGTTGGGTACAGGAGCGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGCATATGAAAATTTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTGGTGTCAATGGGTTTTGGTACAATCACAGCTCATGCACTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAACTCCTGGAATGGAGGCGTATGATGGAATGATAGTTGGAGAACATTCACGGGATACAGATCTTGATGTTAATCCTGTGAGGGCTAAAGAACTTACAAATATCCGTGCTGCTACCAAAGATGATAATGTGAAGCTGACTCCCCCGCGCCTTATGACACTTGAAGAAGCTATAGGGTATGTAGCTTCGGATGAGCTTATTGAGGTTACTCCAAAATCCATCCGTTTGAGGAAGAAATACCTTGATGTTAACAAGCGTAAAGCCATGAGTAAAAGGCCAAAGGAATGA 2013 0.4839 MAGPILRSLWSSTRKSFSSSFSSSSSPSAPFSHSRFFSRTFAAAPAAATTATTASSLDPSHLRNVAVIAHVDHGKTTLMDRLLRQCGADLPHERAMDSISLERERGITISSKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPADARNMSQLLDAVVRHVPPPNASIDAPFQMLVSMMEKDFYLGRILTGRIYSGIVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISIAGLSSPAIGHTVATVEVMSALPTVELDPPTISMTFGVNDSPLAGRDGSHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVTIEVNDEHVGLIMEALSHRRAEVTDMGPVSGTVGRTRLCLTCPSRGLVGYRSVFSSDTRGTGFMHRAFHAYENFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVTPGMEAYDGMIVGEHSRDTDLDVNPVRAKELTNIRAATKDDNVKLTPPRLMTLEEAIGYVASDELIEVTPKSIRLRKKYLDVNKRKAMSKRPKE* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1000 670 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 258 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 669 - -
Gso12g1000 670 CDD BipA_TypA_II 265 362 - -
Gso12g1000 670 SUPERFAMILY EF-G C-terminal domain-like 461 577 IPR035647 -
Gso12g1000 670 TIGRFAM small_GTP: small GTP-binding protein domain 63 204 IPR005225 GO:0005525
Gso12g1000 670 Gene3D - 452 546 - -
Gso12g1000 670 Gene3D Translation factors 260 363 - -
Gso12g1000 670 CDD TypA_BipA 62 257 - -
Gso12g1000 670 Pfam Elongation factor Tu GTP binding domain 62 255 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 SUPERFAMILY Translation proteins 207 362 IPR009000 -
Gso12g1000 670 Gene3D Elongation Factor G (Translational Gtpase), domain 3 370 654 - -
Gso12g1000 670 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 62 662 IPR006298 GO:0005525
Gso12g1000 670 CDD BipA_III 369 446 - -
Gso12g1000 670 Gene3D - 60 258 IPR027417 -
Gso12g1000 670 Pfam Elongation factor Tu domain 2 279 352 IPR004161 GO:0005525
Gso12g1000 670 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 PRINTS GTP-binding elongation factor signature 104 112 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 PRINTS GTP-binding elongation factor signature 124 134 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 PRINTS GTP-binding elongation factor signature 140 151 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 PRINTS GTP-binding elongation factor signature 176 185 IPR000795 GO:0003924|GO:0005525
Gso12g1000 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 267 IPR027417 -
Gso12g1000 670 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 669 - -
Gso12g1000 670 CDD BipA_TypA_C 461 541 IPR035651 -
Gso12g1000 670 Pfam Elongation factor G C-terminus 459 542 IPR000640 -
Gso12g1000 670 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 97 112 IPR031157 -
Gso12g1000 670 Gene3D bipa protein 547 662 IPR042116 -
Gso12g1000 670 SUPERFAMILY EF-G C-terminal domain-like 367 450 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1000 Gso-Chr12 12751422 12761091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1000 62 185 Eukaryotic Initiation Factors Gene Family AT3G22980 43.077 6.85e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1000 K06207 - gmx:100782425 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1000 12 12751422 12761091 Gso12g1000 12 12751422 12761091 ECH