Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0988 ATGGAGGTTGTTTTGCAGTTTAGTTTTGCTGAGGTTGATTGGGAGAAGCTAAGGGTTTCTGATTATAAAGTTATGCCACGTGTTGCTGATAAAATAAAATTGATAGATGGATCAAGGGAAGCTCTTAAGCTTTCTGTAAGGATCACTGATCTTTGGTTCATTGGGATTCCCGGAAAGACTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGATGAAATCCATGTTGTTTGCAAGCAGGATCAGCTGAAGTCTCGCAAGGCTGATTTGAAAGAGAATTTTACTTATTTACCTTTTAGGAAATTCAGATTTGTTTCTTTTTCTAGTGTCATTGCTAGTGATTTTAAAATTGGACTCTTGGTTGATGTTATTGGCGTGGTTGATGAAGTGGTATTCCGATATGTGTCATCCAAAAATACGAGGGTTGTTTTGAATTTAAAGGATTTAAGTGGCCAGGTACTATCCTGTACACTCTGGGAAAATTACTGCTTACAATTTTTGTCTTATTTGAATGATATTGAAGATGAAAGGCCGATCGTTATTCTCTTGACTCATGCTAGGATTAAGGAAGCACAGGGATCATATCCGGCATCGGTCAGTAATTCTTTCAAGGCGTCCAAACTCATGATCAATGATCTCGTGCTGGAAATTCAAGAATTTAGAGAGGAGTTTGTTTGTGTTACTGTCGCCAAGATTATAGCCGTAGTGATGGACAACTATTCATGGTGCTATCCGCCTTGTGGTCAATGTTATAAAAAAGCTAACATGCAAACTGTGCTGTTCACATGTTCGTGTGGCAAAGAGAATGATCAACCTGTACTGAGGTATCGGGTTGAGGTGATGGTTAGTCACAAGGGTGAACAAACCAAATTTTTGATCTGGGATCATGAATGTGCACAGTTAATTGGTCAGTCAGCGGATGAAGTCAACAGGCTCAAAATAGAAGATGGGGATGTTGATTTAAATGCCTCTCCTCAAGCATTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTCTGTTGTTCTTAAATATTCAGATGAATTAGAGTTGATCAATGTTGTGCTAGATATGATTCCCGATAGTGAGCAATCTCTGTCTATTACAGCTGATCATGATCAGTCAATGCTTGCCTCAAGTGAGCCTACAAAGTTTGAATCTCAATCTGTGTCTGTTACCGGGGATCATGACCCTCTTCTCAGGATTCCATTAACACCAACTAAGCGCGTATCTTCTGATGAGTTGGATAATGAGCGAAAAAACTTTGAGATCTCACCTGCTGAAGTTTCCTCAAAAAAATTAGCCAAGCATTCTCAGCCTGAATGA 1356 0.396 MEVVLQFSFAEVDWEKLRVSDYKVMPRVADKIKLIDGSREALKLSVRITDLWFIGIPGKTEQAEMVVVDSDGDEIHVVCKQDQLKSRKADLKENFTYLPFRKFRFVSFSSVIASDFKIGLLVDVIGVVDEVVFRYVSSKNTRVVLNLKDLSGQVLSCTLWENYCLQFLSYLNDIEDERPIVILLTHARIKEAQGSYPASVSNSFKASKLMINDLVLEIQEFREEFVCVTVAKIIAVVMDNYSWCYPPCGQCYKKANMQTVLFTCSCGKENDQPVLRYRVEVMVSHKGEQTKFLIWDHECAQLIGQSADEVNRLKIEDGDVDLNASPQALDRLLGCFLAFKVKVQPRFRNSVVLKYSDELELINVVLDMIPDSEQSLSITADHDQSMLASSEPTKFESQSVSVTGDHDPLLRIPLTPTKRVSSDELDNERKNFEISPAEVSSKKLAKHSQPE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0988 451 Gene3D - 253 358 IPR012340 -
Gso12g0988 451 SUPERFAMILY Nucleic acid-binding proteins 103 223 IPR012340 -
Gso12g0988 451 MobiDBLite consensus disorder prediction 382 451 - -
Gso12g0988 451 MobiDBLite consensus disorder prediction 382 404 - -
Gso12g0988 451 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 35 297 - -
Gso12g0988 451 MobiDBLite consensus disorder prediction 421 436 - -
Gso12g0988 451 CDD RPA1_DBD_C 215 355 IPR013955 -
Gso12g0988 451 Pfam Replication factor-A C terminal domain 234 318 IPR013955 -
Gso12g0988 451 PANTHER REPLICATION FACTOR A 1, RFA1 35 297 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso12g0988 451 CDD RPA1_DBD_B_like 123 222 - -
Gso12g0988 451 Gene3D - 98 228 IPR012340 -
Gso12g0988 451 SUPERFAMILY Nucleic acid-binding proteins 222 350 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0988 Gso-Chr12 12553161 12558046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0988 97 321 Core DNA Replication Machinery Family AT5G61000 21.908 4.81e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0988 - - gmx:102667657 849.351