Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso12g0984 | ATGGGTAAACAATTAGGGTTGCTAAAAATCATTGTTATGCAAGGGAAAAGGTTGGTGATCCAGGATTTCAAGACTAGTGATCCTTATGTTGTGCTCAAGCTAGGGAATCAGACTACAAAGACCAAGGTAATTAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTAAATTTCACTTTGACAAAACCCTTGGGAGTTTTGAATTTGGAAGTGTTTGATAAAGATCTTTTGAAGGTTGATGACAAGATGGGGAATACTTTCCTGAACCTTCAACCAATAGTCTCTGTAGCCAGATTAAGAGACATCTTAAGAGTGTCCTCTATTGAGACGACATTAAGGAAGGTCATACCTGATGGTGAAAACTATCTTGTCCGTGAAAGAAATACCAACTGTGTGAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGAGGAGTTAAGTATGGGGAACTAGAATTGACCATCAAGTTGGTCACACATGTTGCTCCTGCAATACAATGCAACAATTGCATGTGTCATAAGTGTAGATCTCTAATTAACATTTTATGTCTAGTTAATCAGGGTTTCTGGAAAATCTGTACGATCTCCTCTACAGCTAGTGACCAAGTTTCCTAA | 618 | 0.3883 | MGKQLGLLKIIVMQGKRLVIQDFKTSDPYVVLKLGNQTTKTKVINSCLNPVWNEELNFTLTKPLGVLNLEVFDKDLLKVDDKMGNTFLNLQPIVSVARLRDILRVSSIETTLRKVIPDGENYLVRERNTNCVNGEVVQNVWLRLRGVKYGELELTIKLVTHVAPAIQCNNCMCHKCRSLINILCLVNQGFWKICTISSTASDQVS* | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso12g0984 | 205 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Gso12g0984 | 205 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| Gso12g0984 | 205 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 11 | 1 | 163 | - | - | |
| Gso12g0984 | 205 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 4 | 158 | IPR035892 | - | |
| Gso12g0984 | 205 | Pfam | C2 domain | 7 | 97 | IPR000008 | - | |
| Gso12g0984 | 205 | PRINTS | C2 domain signature | 22 | 34 | IPR000008 | - | |
| Gso12g0984 | 205 | PRINTS | C2 domain signature | 46 | 59 | IPR000008 | - | |
| Gso12g0984 | 205 | PRINTS | C2 domain signature | 67 | 75 | IPR000008 | - | |
| Gso12g0984 | 205 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Gso12g0984 | 205 | Gene3D | C2 domain | 3 | 169 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso12g0984 | Gso-Chr12 | 12454139 | 12455237 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso12g0984 | 5 | 157 | C2H2 Transcription Factor Family | AT4G05330 | 38.312 | 9.10e-30 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso12g0984 | - | - | gmx:100802784 | 397.512 |