Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0980 ATGACTCAGTGCAGTGACTCTGAAAACAATCATCATAACATCATAGTGGAGGGACGAAAAGATAGCTTAATTAGAACTTGTCCTACGTGTGGTCATCATATCAAATGCCAAGATCAGGGTGGTGGAATTCATGACTTACCTGGACTGCCTGCTGGAGTGAAGTTTGATCCCACGGATCAAGAGATTCTTGAACATTTAGAAGCGAAGGTGCGATCTGATATTCATAAGCTTCATCCGCTAATTGATGAGTTCATTCCAACTCTTGAAGGCGAAAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCTTCCAAGGCATACACTACAGGAACAAGGAAGCGGAGAAAGGTGCACTCAGATGAGGATGGAAGTGAGACACGTTGGCACAAAACAGGTAAAACTAGGCCAGTTTACAACAATGCCAAGTTGAAAGGGTACAAGAAAATCCTTGTGCTTTACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGGAGTGATGAAGAGGAAAAAGAAGGGGAGTTAGTGGTCTCCAAGGTTTTCTACCAAACACAGCCAAGACAATGTGGTTCCCTTATGAAAGACTCATCAGTTCCTGGGAAACATATGAAGGGTCAAAGTGTCCATGAGGTAATGAATAACAAAAACAACAATAATGGGTATGTTGGGTACTATCATTCAAATTTCATATCATTTGAACAAGGAGGGCAACATAGACCTAGTAATGCTCAAGTGATTTCCCATATCCCCTTCCATGAAGGTGCCCCTTTCATTCCTTGA 855 0.4257 MTQCSDSENNHHNIIVEGRKDSLIRTCPTCGHHIKCQDQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNNAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSVPGKHMKGQSVHEVMNNKNNNNGYVGYYHSNFISFEQGGQHRPSNAQVISHIPFHEGAPFIP* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0980 284 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
Gso12g0980 284 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 283 IPR044799 GO:0003700
Gso12g0980 284 MobiDBLite consensus disorder prediction 123 147 - -
Gso12g0980 284 MobiDBLite consensus disorder prediction 128 147 - -
Gso12g0980 284 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Gso12g0980 284 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Gso12g0980 284 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 283 - -
Gso12g0980 284 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0980 Gso-Chr12 12222122 12225495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0980 25 223 NAC Transcription Factor Family AT4G28500 79.000 1.05e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g0980 NAM 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0980 - - gmx:100797459 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0980 12 12222122 12225495 Gso12g0980 12 12222122 12225495 ECH