Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0975 ATGGGTGTGGATTACTACAAGATCTTGCAGGTTGATAGGAGCGCCAAAGACGACGACTTGAAGAAGGCTTATAGGAAACTTGCTATGAAATGGCACCCTGATAAGAACCCCAACAACAAGAAAGAAGCTGAAGCTAAGTTTAAGCAGATTTCCGAAGCATACGAGGTACTTAGTGATCCCCAAAAGAGAGCAATCTATGATCAATATGGAGAAGAGGGTCTGAAGGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTGGAACTACTTTCTTCTCCACAGGAGATATCCCGGGTTCGTTTCGGTTCAATCCGAGGAATGCCGATGACATTTTTGCAGAGTTCTTTGGTTTCTCAAGCCCATTTGGTGGAATGGGTGGGAGAGGTGGTGGCGGCAGTGGTGGTGGCATGAGATCAAGGTTCCCTGGTGGGATGTTTGGTGATGATATGTTTGCATCTTTTGGGGAAGGGGGAGGAGTACATATGAGTCAAGGTGCATCTCGGAAAGCTCCTCCCATTGAGAGTAAATTGCCCTGCACTCTTGAGGAGATATATAAAGGGACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCAGATGCTAGTGGAAAAACCATGCCAGTAGAGGAAATCTTGACCATTAATGTCAAGCCTGGCTGGAAGAAAGGAACAAAGATCACATTCCCTGAAAAGGGAAATGAACAGCCAAACGTGATGCCTGCAGACCTTGTTTTCATCATTGACGAAAAACCGCATGGCGTCTTCACTCGTGACGGAAATGACCTTGTTGTCACCCAGAAGATTTCTCTTGCAGAGGCATTAACTGGTTATACAGTGCACCTCACTACCCTAGATGGTAGAAACTTAACCATACCAATCAACAATGTTATTCATCCCAATTATGAAGAGGTTGTCCCAAGAGAAGGAATGCCACTTCCAAAAGATCCATCAAAGAAGGGGAATTTGAGGATAAAGTTTAACATCAAGTTCCCAACTAGGCTCACTGAAGAGCAAAAAGCAGGAATCAGAAAACTCTTAAATGCCTAA 1050 0.4467 MGVDYYKILQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGTGTTFFSTGDIPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGSGGGMRSRFPGGMFGDDMFASFGEGGGVHMSQGASRKAPPIESKLPCTLEEIYKGTTKKMKISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVMPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHLTTLDGRNLTIPINNVIHPNYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPTRLTEEQKAGIRKLLNA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0975 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 173 253 IPR008971 GO:0006457|GO:0051082
Gso12g0975 349 Gene3D - 253 333 - -
Gso12g0975 349 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 348 - -
Gso12g0975 349 CDD DnaJ 4 59 IPR001623 -
Gso12g0975 349 SMART dnaj_3 3 62 IPR001623 -
Gso12g0975 349 Pfam DnaJ domain 4 67 IPR001623 -
Gso12g0975 349 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gso12g0975 349 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gso12g0975 349 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso12g0975 349 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gso12g0975 349 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gso12g0975 349 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 348 - -
Gso12g0975 349 CDD DnaJ_C 172 335 - -
Gso12g0975 349 Pfam DnaJ C terminal domain 174 332 IPR002939 -
Gso12g0975 349 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso12g0975 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 255 341 IPR008971 GO:0006457|GO:0051082
Gso12g0975 349 Gene3D - 173 251 - -
Gso12g0975 349 SUPERFAMILY Chaperone J-domain 3 131 IPR036869 -
Gso12g0975 349 Gene3D DnaJ domain 3 130 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0975 Gso-Chr12 11961797 11964808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0975 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 3.91e-10 59.3