Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0970 ATGCTTGCGGTGTCACCTTTGAGGAGCATTAAAGATGAAAAGAACCAAGGAGAGATGGAGGGTAATTTCTCAATGGCAACAACAACAACAACCGGTGATGTTGACTTTGGTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGACCTCTTCGTCGGCATCGACATCAACGGAGATGTCTTGCCGGACCTGGAGATGTTCCATGAGTTCTCCGTCGACGTCAACACCGGCGAGGAATCGTCGGAGATGAACTCATCGGCAGATAACAGCAAAGTTGAGAATGATCAGAATGTCATGATCAACACTGGTCCAAAAAAAGAAGAGGAAGAAGATAAAGCTTCTTGCAATTCTTCGGGTCAAGACTTGGGGTCAATCCGAGGAGAAGAGATTGTGAGCAAGAGAGATGAATCCGTGGTGGTGAATCCAGCACCAAAGGATGGTGGAAAAGGAAGAAAATCTTCATCCGCTCAATCGAAGAATAATAATAGTAGTAATAATGCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTAACTCGCCATAACATTGCTAGTCACCTTCAAAAATATAGATCTCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTATGCTGGTGGAGGGAAGAGAGAGGGGAATCCATGGTTAGCACCAATCATGGGTTTCCCACCAATGACCACCCCAATGCACCATTTTAGACCTCTACATGTATGGGGGCACCCTTCTATGTCCTTGGTGCACATGTGGCCTAAGCATCTTTCAAATTCACCACCACTCTTATGGCCGCTATCGCCACCAGCTGTACCACCACAAGACCCTTCATTTTGGCAACAACTGGCTCCTAACGCACTAATCCCAGGAACAGCTTGTTTTCCACAACCTCTGACACCAACGAGATTTGGAAGCCCCCCTGTCCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGGCATTGGCGTCCTTGGTCCCAGTTCCCTCTTGGACTTTCATCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCTTGGCTGCCGCTACCTATTGGACTTAAGGCTCCAGCTCTTGATAGTGTGATGAGTGAATTACAAAAACAAGGAATTCCAAACATTCCACCCTCTAGTGCTTGA 1287 0.4724 MLAVSPLRSIKDEKNQGEMEGNFSMATTTTTGDVDFGDLSEGNLLESINFDDLFVGIDINGDVLPDLEMFHEFSVDVNTGEESSEMNSSADNSKVENDQNVMINTGPKKEEEEDKASCNSSGQDLGSIRGEEIVSKRDESVVVNPAPKDGGKGRKSSSAQSKNNNSSNNAQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLYAGGGKREGNPWLAPIMGFPPMTTPMHHFRPLHVWGHPSMSLVHMWPKHLSNSPPLLWPLSPPAVPPQDPSFWQQLAPNALIPGTACFPQPLTPTRFGSPPVPGIPPHAMYKADHGIGVLGPSSLLDFHPSKECIDAAIGDVLSKPWLPLPIGLKAPALDSVMSELQKQGIPNIPPSSA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0970 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 231 IPR017930 -
Gso12g0970 428 Pfam Myb-like DNA-binding domain 178 227 IPR001005 -
Gso12g0970 428 MobiDBLite consensus disorder prediction 78 104 - -
Gso12g0970 428 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 428 - -
Gso12g0970 428 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
Gso12g0970 428 Gene3D - 172 233 - -
Gso12g0970 428 MobiDBLite consensus disorder prediction 154 174 - -
Gso12g0970 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 175 229 IPR006447 GO:0003677
Gso12g0970 428 MobiDBLite consensus disorder prediction 1 29 - -
Gso12g0970 428 MobiDBLite consensus disorder prediction 78 177 - -
Gso12g0970 428 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 428 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0970 Gso-Chr12 11827766 11833070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0970 1 303 G2-like Transcription Factor Family AT5G44190 44.373 1.71e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso12g0970 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0970 - - gmx:100777595 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0970 12 11827766 11833070 Gso12g0970 12 11827766 11833070 ECH