Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0964 ATGGCGAAGGAGAAGAAAAACTTGTCCAACAAGAACAAGAAGCCAAGCAATGCAGACGAGGTTCACTTCCGCGGAGTCCGGAAGCGCCCCTGGGGCCGCTATGCCGCCGAGATCCGCGACCCCGGAAAGAAGACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGATGCCGCCCGCGCCTACGACGTCGCCGCCCGAAACTTCCGTGGCCCCAAAGCCAAAACCAACTTCCCCTTCCTCCCCGACAACAACACCAACGTTAACCTCAACAAGAAGAACAACAACGTTAACGTTAAATCTGACAGTCCCAGCCAGAGCAGCACCGTGGAGTCCTCCACCCCGGAGCGTGAATTCACGCGCCGCGCCGCCCCCGCCGCAATGGATCGCTTTCCGTTCCTACCCATCCAGCAGCAAATCCTCGTGACCCACCCCGTCGCACCCATGCGCCCGGTTTACTTTCTCGACCGGGCCCACTTCATGACCCAGCCCTTCCCACTCCGATTCGAACCGGGTCCGGTCCAGAGCGACTCCGACTCGTCCTCCGTCGTCGTCGATTGCCAGCCCAAAAGAGAGCTCAATCTCGATCTTAACTTGGCTCCACCTAATGAATATTAA 618 0.5955 MAKEKKNLSNKNKKPSNADEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDVAARNFRGPKAKTNFPFLPDNNTNVNLNKKNNNVNVKSDSPSQSSTVESSTPEREFTRRAAPAAMDRFPFLPIQQQILVTHPVAPMRPVYFLDRAHFMTQPFPLRFEPGPVQSDSDSSSVVVDCQPKRELNLDLNLAPPNEY* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0964 205 MobiDBLite consensus disorder prediction 1 24 - -
Gso12g0964 205 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Gso12g0964 205 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gso12g0964 205 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Gso12g0964 205 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Gso12g0964 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 17 187 - -
Gso12g0964 205 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gso12g0964 205 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gso12g0964 205 MobiDBLite consensus disorder prediction 79 114 - -
Gso12g0964 205 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gso12g0964 205 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Gso12g0964 205 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 187 - -
Gso12g0964 205 MobiDBLite consensus disorder prediction 74 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0964 Gso-Chr12 11660243 11661268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0964 20 202 AP2-EREBP Transcription Factor Family AT5G44210 52.105 4.55e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g0964 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0964 K09286 - gmx:100775465 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0964 12 11660243 11661268 Gso6g1990 6 35017632 35018496 ECH
Gso12g0964 12 11660243 11661268 Gso12g0964 12 11660243 11661268 ECH
Gso12g0964 12 11660243 11661268 Gso15g0661 15 5933616 5934726 ECH