Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0963 ATGAGTAGTGTTTTTTCAGAACACAAATTCCAACTTCAACCCTCTCACCAACTTCTCTCCCTCAAGAAATCCCTGAGGGACATAGACATCCCAGTCCCACCAAGGAAGCTCCTCACCCGCCGCTCCGCCGCCGTCCACGACGTCTCCGGCGACATGTTTTCCGATGACACCCTCCGGCACAAGTACCTTCCCCACAATGGCTCCACCGACTCCTCCGACGATGACTCCGGCGACCCCTACGCCTCCGATCAATTCCGCATGTTTGAGTTCAAGGTCCGGCGCTGTACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCATTTGTACATCCCGGCGAGAAGGCCCGCCGTCGGGACCCTCGCCGGTTTCATTACTCTGCAACAGTCTGTCCAGAGTTTCGCCGCGGTCAGTGTGACCGTGGCGATGCATGTGAGTTTTCTCATGGGGTGTTTGAGTGCTGGTTACACCCTTCTAGGTATAGAACCGAGGCTTGCAAGGATGGTAGGAATTGCAAGCGAAAAGTTTGCTTCTTTGCTCACACCCCTCGCCAACTCAGGGTTTTGCATTCCAATGAAAATAGCAACAAGAAAAAGTGCACCAATATGAGCCCTCATAACAACAACAACAACACCAACAATTGTTGTTTGGTTTGCCATTGCTCTTCTTCTACTCGTTCACCAACTTCAACCTTGTTCGGCATGTCTCATTTTTCTCCTCCATTGTCACCACCTTCTCCTTCTTCCCCTTCTAGGTTTGAGACCAACCATCATCATGGTGTTGTGAAATATAATAAGGATGTGCTCTCTGAGCTTATGTGTTCCATGGAGGGTTTGAATTTTGGTGAGGCTTCACTTTTGTCTGCTGCTTCTAAGCCTCACAACAATTTTTCTTCTTGGCTTGATGTTTCTGAGGATCACAATCAAAAACAGTTCAGTACTCTTTCACCAACCATCACTGCTTGTGGAAGCTTTTCCAACAACGGAAATGGGAGATTTTTGAGAGAAGAAAGTGGGGTTGTTGATGATGTTATTTCCCCAGATCTCGCATGGGTGAATGAATTGCTGATGTAG 1071 0.4883 MSSVFSEHKFQLQPSHQLLSLKKSLRDIDIPVPPRKLLTRRSAAVHDVSGDMFSDDTLRHKYLPHNGSTDSSDDDSGDPYASDQFRMFEFKVRRCTRSRSHDWTDCPFVHPGEKARRRDPRRFHYSATVCPEFRRGQCDRGDACEFSHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRVLHSNENSNKKKCTNMSPHNNNNNTNNCCLVCHCSSSTRSPTSTLFGMSHFSPPLSPPSPSSPSRFETNHHHGVVKYNKDVLSELMCSMEGLNFGEASLLSAASKPHNNFSSWLDVSEDHNQKQFSTLSPTITACGSFSNNGNGRFLREESGVVDDVISPDLAWVNELLM* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0963 356 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Gso12g0963 356 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Gso12g0963 356 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Gso12g0963 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Gso12g0963 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 31 355 - -
Gso12g0963 356 Gene3D - 124 188 - -
Gso12g0963 356 PANTHER UNKEMPT FAMILY MEMBER 31 355 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0963 Gso-Chr12 11634943 11636365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0963 80 243 C2H2 Transcription Factor Family AT5G12850 48.780 4.87e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso12g0963 zf-CCCH 3.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0963 K23047 - gmx:100820375 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0963 12 11634943 11636365 Gso12g0963 12 11634943 11636365 ECH