Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0960 ATGCCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATCACCACCGTCACGCCAAATATCACCACCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAATTACAAATCAGATGATTCTCCCCCCGAAGACAAATCCGAGTATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAAAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGCCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAAATAGAGGAGCTTCAATTTTGTGAAGAGGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGCTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACAAAATGTTCTCTCTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCAGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGACATGGATATAAGAATTTCTTCTAGACCGGTGTCAAAACCTCAAAAATTAACTTGGGGAGGGGGTGGTTTTAGGAGTCACACACGACATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGTAGTAGTCGCATGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTCATCAGACACCTTTGCCGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAAACTTCATCCTCTGATGAGCTAACTACGCTAGTTATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTTTGGCAGGGATTAAATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGAGGAAGGAATGA 1308 0.4251 MPAQKRSFPDAPNDHHRHAKYHHQEEEEEEEEEDNYKSDDSPPEDKSEYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIEKYEIEELQFCEEDKNRNKQIQASIAKVAQRQSEALVKRRRDTPGSFVTRSQRNQQNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTELRQRRRKRQTRGRPSQPSSSTASPDGGCIESDMDIRISSRPVSKPQKLTWGGGGFRSHTRHGSGNGSNSKSSRSSRMAKLVDYLRSLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAHQTPLPVEEVEILAVKGCCSTVCDKSFDETSSSDELTTLVIDPSKDELETLQGHESLAGIKSKCISKREHLILAYRRKE* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0960 435 MobiDBLite consensus disorder prediction 160 299 - -
Gso12g0960 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 16 435 - -
Gso12g0960 435 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
Gso12g0960 435 Pfam Zinc finger, C3HC4 type (RING finger) 62 102 - -
Gso12g0960 435 CDD RING-HC_RING1_like 63 103 - -
Gso12g0960 435 MobiDBLite consensus disorder prediction 284 299 - -
Gso12g0960 435 MobiDBLite consensus disorder prediction 1 45 - -
Gso12g0960 435 PANTHER OS11G0578200 PROTEIN 16 435 IPR044592 -
Gso12g0960 435 SUPERFAMILY RING/U-box 49 134 - -
Gso12g0960 435 MobiDBLite consensus disorder prediction 9 25 - -
Gso12g0960 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 133 IPR013083 -
Gso12g0960 435 ProSiteProfiles Zinc finger RING-type profile. 63 103 IPR001841 -
Gso12g0960 435 SMART ring_2 63 102 IPR001841 -
Gso12g0960 435 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0960 Gso-Chr12 11586843 11593259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0960 56 126 C3H Transcription Factor Family AT3G23060 35.135 9.04e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0960 K10695 - gmx:100819311 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0960 12 11586843 11593259 Gso12g0960 12 11586843 11593259 ECH