Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0959 ATGGCCACCATGCTCAGCTACTCACCCCCGCGTTTCAAAATCGCCGTCGACGCTCACCACGATCCTCTCTTACCCTTTCTCCGGTCTATCAAGAAAGCCCTAGAAGCTTCCGACGACTCCGCTTCGAATCTCAGTAACTTACTCAAAGATTGCATCAGAAACTTCAAGAACAATGACCGCTACCGAAACGACGTCAGATTCCTCAAGATCTGGCTCCTATATATGGGAGTTAGTGATGATTTTGAAAGTGTTTTCAAGGAAATGCTGGACAGTAATGTATGTACCAATAGTTCTTCACTTTATGTGTGGTCTGCAAGTTTTTTTGAGTTGAAGGGAAGATTGCATGATGCTCTCACCATCTATCAGCTTGGCATTTGCAGGAATGCAGAGCCAATTGAGTGGTTGAAGAAGGCACAGGCCTTATTTCTCAATAGAATTTCTGAAATACAGAATGCTGCTTCAACTCAGAAGGTTGATGATAAAGAATCCAAGAAATTTGAAGATAATGGCATTAATCCTTGGGGCACCTCTACCATGGATAGCCTGTTAAAGAAAATATATCCTTTAATTATGAAATTTGATGGGTATCGTTCAAGCACTAAACCATACACAGGAAAAGTGGCCTTATCTACCTTGAAGAATTCATCAAGGAATAAAGTTATAGAGATAGGTGGAAAGAAGTACCATATAAAAGGCTGCGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTCGACAGTGACCCTGACAATGTTGTTGCACTAAAGATACAAAAACCAGCTTTCCCTTGGGAATTTTACATTTATCGTCAGCTTGATAAGCGCATCTTAGATAGAGAGAGGTCAAGTTATGGTTTCGCTCACCGAATTCATATCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACATTACAGGATGTGATAAACTCATATGTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTACTACACAATAGAAATGTTACACATGGTTGAAACTCTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATTTGCTAATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGTTCTTCAGCCGAATTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACATACTATTTAAGGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGGATAAACCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGTGCTATTGTTCATATGATGTTGCATAGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGAGCTACATGTATCTTCCCAAACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGACTTTCTTCACTAAGATGCTAAACCAATACCCCCATGATGATGATAGGAGTTTGCTGCAGGACTTGAAGAAGTCCTTCCAAGACTACATGAGCTCCAATCCGCAGCTTATAAAGAAACTAAAGGAGTTACTCTCAAAGCAAAGGGCTTCCTTGTGCTCTGCTTAA 1596 0.4117 MATMLSYSPPRFKIAVDAHHDPLLPFLRSIKKALEASDDSASNLSNLLKDCIRNFKNNDRYRNDVRFLKIWLLYMGVSDDFESVFKEMLDSNVCTNSSSLYVWSASFFELKGRLHDALTIYQLGICRNAEPIEWLKKAQALFLNRISEIQNAASTQKVDDKESKKFEDNGINPWGTSTMDSLLKKIYPLIMKFDGYRSSTKPYTGKVALSTLKNSSRNKVIEIGGKKYHIKGCAGQGGFAQVYKANVDSDPDNVVALKIQKPAFPWEFYIYRQLDKRILDRERSSYGFAHRIHIYSDCSILICDYLANGTLQDVINSYVVLGKSMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLIRYARGDLTEDGFFSRIGPWCDQGLCLVDWGRGIDLHLFPDHILFKGDCRTSGFRCIEMLEDKPWKFQVDAYGLCAIVHMMLHSSYMEVVKKEQSDGSYMYLPKLPFKRYWNIELWKTFFTKMLNQYPHDDDRSLLQDLKKSFQDYMSSNPQLIKKLKELLSKQRASLCSA* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0959 531 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 17 160 IPR015661 GO:0007094
Gso12g0959 531 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 149 530 IPR015661 GO:0007094
Gso12g0959 531 PANTHER BUB1 KINASE, ISOFORM A-RELATED 17 160 - -
Gso12g0959 531 PANTHER BUB1 KINASE, ISOFORM A-RELATED 149 530 - -
Gso12g0959 531 SMART mad3_bub1_i 13 125 IPR013212 -
Gso12g0959 531 Pfam Mad3/BUB1 homology region 1 15 125 IPR013212 -
Gso12g0959 531 Pfam Protein kinase domain 229 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0959 531 SMART serkin_6 228 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0959 531 Gene3D Transferase(Phosphotransferase) domain 1 225 528 - -
Gso12g0959 531 Gene3D - 11 165 - -
Gso12g0959 531 ProSiteProfiles Protein kinase domain profile. 228 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0959 531 ProSiteProfiles BUB1 N-terminal domain profile. 1 163 IPR013212 -
Gso12g0959 531 SUPERFAMILY Protein kinase-like (PK-like) 225 509 IPR011009 -
Gso12g0959 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0959 Gso-Chr12 11575997 11581369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0959 222 488 MAP Kinase Kinase Kinase Kinase AT3G15220 24.199 8.93e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Gso12g0959 Pkinase 1.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0959 K02178 - gmx:100783171 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0959 12 11575997 11581369 Gso12g0959 12 11575997 11581369 ECH