Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0953 ATGTCGCTGCGGGCTCTGAAGGAATCTCTGCGACCTTGCTCAACCCTAAAACCCTCTTCCTCTTCCTCAATTACTCAAACACAGCCTTATTCAATTCTCCGCGAAAGCGATTCCCTTTTTCCAATCCATAGAAAGCCCCCTAAATCCTCCCTTTCCCACCAGCTTCGCCGCCTCGACGATTCACTAACCCAAACCCACTCCAAAACCCTACAACAGCAACAACAACAGCAAGAAGAAAAAGAAGAAGAACCAGAGATTAAGATAACAAAATTCGCTTCACCCAAATTGCCACAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTTCTCTTGTCTTCGCATGGAGAATTTCCCCCGGTTCAGGTTCCTGCTTCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGAGTGAGGTTTTTGTATGGGTTGTACAAGAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCCGCCGTCTTTGCTAAAGAAGGACATTCTACTCTAAATGAAAACCATGTAGAGAAAAGAGATCCTGCATTAATAATTTGCCCCACTTCTGTTATCCACAACTGGGAGAGCGAATTCTCCAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGAACCTGATATATGATAAATTGGAAGCAAATGAAGTGGAAATACTCATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCGTTGTTAGATATTAACTGGAACATTGTGATTATCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGCAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGATTGGGTTGCACCTGGATCCCTTGGAACACGGGAACATTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGCAGTTCTTCATAAATATCTGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGCAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGCTATATGGCCTTACCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCGTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAACCACCTTGAGCTGATTAAGCCAAATCCCAAAGATGATCCAGACAAACAAAATAAAGATGCAGAGTTTGCTGCTGCAGTCTTTGGCCCTGATATTGATTTAGTGGGGGGGAATACACAAAATGAAAGCTTCATGGGTCTCAGTGATGTGACACATTGTGGAAAAATGCGAGCACTTGAAAAACTATTGTACTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTAATATCAACTCGTGCGGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACTTACAAGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTTGTGGTGTTCCGTCTGCTTGCAGCTGGTTCACTTGAAGAACTTGTATACTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGAGAGCTTTTTGGGATTTCCAATTTATTTCGAGATTTATCTGATAAGTTATTTACCGGTGAGATCATTGAATTGCATGAAGAACATGGGCATGAAACAGAACAACCGGAAGAAGTAAATCCGTCAGAAGAAGAAACAAGTTCATCAGTACTGGAATCAGAAACCAGATTGTGTAACAAATCTGTGAGGGATGCAACAAGTAAACCAGATCTTGTAGACCTTGGCATTGTCTATACTCATCGCAATGAAGACATTGTCAACTTCGGCCCAGGGATTCAAGGGAAAATAGATACTAGCATCCCCTTAGATGATAGCCTAGTCAAGCCAAGCATCTCTTTGGATTTGGACCACCAAAGAAAAAAACCAGATAGTATACCTAAAAAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGGCTCCTTGCCCAGTCTCTGGGCATGGGAGAGCTTGCTTTTAGCAAATGGTTGCTATCAGCGACTCCACTCGAGAGAGAAAAAGTGCTTCTTGACTTCAAGAAGAAAAAAAAGATACCTAACGGTTGA 2613 0.4214 MSLRALKESLRPCSTLKPSSSSSITQTQPYSILRESDSLFPIHRKPPKSSLSHQLRRLDDSLTQTHSKTLQQQQQQQEEKEEEPEIKITKFASPKLPQFQFDHTGPFEPLLLSSHGEFPPVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFAKEGHSTLNENHVEKRDPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRNLIYDKLEANEVEILITSFDTYRIHGSSLLDINWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTAMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGAIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQNKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVTHCGKMRALEKLLYSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTGEIIELHEEHGHETEQPEEVNPSEEETSSSVLESETRLCNKSVRDATSKPDLVDLGIVYTHRNEDIVNFGPGIQGKIDTSIPLDDSLVKPSISLDLDHQRKKPDSIPKKQKVPLIDERKRTQYRLLAQSLGMGELAFSKWLLSATPLEREKVLLDFKKKKKIPNG* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0953 870 MobiDBLite consensus disorder prediction 64 85 - -
Gso12g0953 870 MobiDBLite consensus disorder prediction 1 30 - -
Gso12g0953 870 Pfam SNF2-related domain 147 404 IPR000330 GO:0005524|GO:0140658
Gso12g0953 870 Gene3D - 376 732 IPR027417 -
Gso12g0953 870 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 314 IPR014001 -
Gso12g0953 870 Pfam Helicase conserved C-terminal domain 520 632 IPR001650 -
Gso12g0953 870 SMART ultradead3 127 322 IPR014001 -
Gso12g0953 870 SMART helicmild6 549 632 IPR001650 -
Gso12g0953 870 MobiDBLite consensus disorder prediction 13 30 - -
Gso12g0953 870 Coils Coil 63 83 - -
Gso12g0953 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 523 676 IPR001650 -
Gso12g0953 870 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 46 853 - -
Gso12g0953 870 Gene3D - 111 363 IPR038718 -
Gso12g0953 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 364 IPR027417 -
Gso12g0953 870 CDD SF2_C_SNF 514 643 - -
Gso12g0953 870 PANTHER SNF2/RAD54 FAMILY MEMBER 46 853 - -
Gso12g0953 870 MobiDBLite consensus disorder prediction 714 740 - -
Gso12g0953 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 687 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0953 Gso-Chr12 11513894 11520432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0953 150 673 RAD5 or RAD16-like Gene Family AT5G05130 25.518 5.00e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso12g0953 SNF2_N 2.5e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0953 K20098 - gmx:100781003 1671.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0953 12 11513894 11520432 Gso12g0953 12 11513894 11520432 ECH