Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0944 ATGGATCAGCTTGGAATCATTCAACCATCTTCTTCAACCAAGGTTGAAAGAAGGCTAGTGGAGAAAAACAGAAGAAATCAAATGAAGAACCTGTACAACAAACTCAACTCTCTTCTCCCTAGCTATAACCCCAAGGAAGCATTACCACTGCCTGACCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCAAAGGTGAAGATGGCACAGGAGAAGAAAGAGAATTTGCAGGGAATTAGAAAGAGATCCCGTGGTTGCTTCTCCAATAATAGTGCCAATTTTGCTGCAACTTCTGGTTTCCCAAAATCGCCACAACTTGAGATTCACGAAGTGGGTTCTTCTCTACAAGTTGTTCTGACTTGTGGGCTAGACCACCAGTTCATTTTCTATGAAATCATTCAAATACTGCATGAAGAGAACATTGAGGTCAGAAGTGTCAATTCCTCGCTCGCTGGAGACTCAGTGCTTCATGTTGTGCATGCTGAGATTCCTCAGTCTTTTCTTCAATTTGGAGCTACCAAAGTAAGTGAGAGATTAAAAAGGTTTGTGAATGGGTCCTGCAGTGATGTGGAAACACAGCCCGAGTTGTGGGATTTTGAAATTGGTACTGATGATATGTGGGGTTTCTAG 636 0.4261 MDQLGIIQPSSSTKVERRLVEKNRRNQMKNLYNKLNSLLPSYNPKEALPLPDQVDEAINYIKSLEAKVKMAQEKKENLQGIRKRSRGCFSNNSANFAATSGFPKSPQLEIHEVGSSLQVVLTCGLDHQFIFYEIIQILHEENIEVRSVNSSLAGDSVLHVVHAEIPQSFLQFGATKVSERLKRFVNGSCSDVETQPELWDFEIGTDDMWGF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0944 211 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Gso12g0944 211 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 192 - -
Gso12g0944 211 Coils Coil 54 81 - -
Gso12g0944 211 SMART finulus 18 70 IPR011598 GO:0046983
Gso12g0944 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 79 IPR036638 GO:0046983
Gso12g0944 211 Gene3D - 8 90 IPR036638 GO:0046983
Gso12g0944 211 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 192 IPR015660 GO:0003700|GO:0006357
Gso12g0944 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0944 Gso-Chr12 11296663 11298187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0944 12 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.444 3.51e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g0944 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0944 - - gmx:100817883 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0944 12 11296663 11298187 Gso12g0944 12 11296663 11298187 ECH
Gso12g0944 12 11296663 11298187 Gso6g2396 6 45560381 45561799 GST