Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0942 ATGTCTACACTTCTCATCTCTTTGCTTCTTTTCATCATCTCAAACCTTACCCTTCTTCTTCTAACCTCAGTTTCATGTACAGAGTTCATCTACAACACCAACTTCAACTCCACCAACACCCTTCTACACGGCAACGCCACCATAGAATCTTCCATCCTCACCCTCACCAACCGTTCCACCTTCTCTGTGGGCCGTGCTTTCTACCCTTTTAAGATTCTCACAAAACCTTCCAACTCTTCTTCAACCCCTTTACCATTCTCAACCTCATTCATTTTCTCCATTACACCCTTCAAAGACCTTCTCCCTGGCCATGGCTTTGTCTTCATATTGACACCTTCTGCAGGCACCACTGGGGTGAATTCTGCTCAGCATCTTGGCCTCTTTAACTATACCAACAATGGTGATCCCAACAACCATGTCTTTGGCGTTGAGTTTGATGTGTTTGACAACCAAGAGTTTAATGACATAAATGACAACCATGTGGGGGTGGACATAAACTCTCTTTCTTCTTTTGCTTCCCATGATGCTGGATTTTGGGGTGGCGGCGACAACGATGAGTTCGAGGATTTGAAGCTTAATGATGGTGAGAACTATCAGGTGTGGATTGAATATTTGGATTCTAGAGTTAATGTCACAATGGCTCCTGCAGGCCAAAAAAGGCCTCAGAGGCCCTTGATTAGTGAAATTGTGGATCTTTCTGAAGTTCTTCTGGATGAAATGTATGTTGGATTTTGTGGGGCAACAGGGCAGCTTGTGGAGAGTCACAAGATTTTGGCTTGGAGCTTCAGTAACACAAATTTTTCCATTGGTGATGCTTTAGTCACTACAAATTTGCCTTCATTTGTGCATTCCAAAGAGTCTATTTTGAGGTCAACAGGTTTTATTGTAGGGATCATTATAGGTGTTTTGTTTGTCATTGGTGGTGCTGTTGTGATATTTGTGCTTTTTCTCAGAAGAAAAAGGAGCAAAAGAAAGGACGAAGAACAAGAAGAAATTGAAGATTGGGAACTAGAGTATTGGCCACACCGTGTTAGTTATGAAGATATTTATGCTGCTACTAAAGGATTTTCAGACCAACATGTAATTGGGTTTGGAGGGAATGGGAAAGTCTATAAAGGGCTTCTGCAAGGAGTGCAAGTTGCAGTGAAAAGAATTCCTTGTGACAGTGAACATGGAATGAGAGAGTTTTTGTCTGAGATTTCAAGTTTAGGCAGGTTAAAGCATAAGAATGTGGTTCCATTGAGAGGTTGGTGTAAGAAACAGAGGAGCTTGATTTTAATCTATGACTATATGGATAATGGGAGTTTAGACAAAAGAATATTTGATGGTGATGAGAACACAATTTTTGGGTGGGAGAAGAGAATCAAGGTGCTGAAGGATGTGGCACATGGAATATTGTACTTGCATGAGGGTTGGGAGGTTAAGGTGTTGCACAGAGACATCAAGTCAAGCAATGTGTTACTTGATAAGGGTATGAATGCAAGGTTGGGGGATTTTGGACTAGCAAGAATGCACCATCATGGGCAGATTGCTCATACCTCACAAGTGATTGGAACTGTTGGTTTCATGGCACCTGAACTTATTCACACTGGGAGAGCCTCAACTCAGACTGATGTGTTCAGTTTCGGTGTGTTGATTTTAGAGGTGGTGTGTGGGAGAAGACCAAATGAAGAAAACAGGCCTTTGGTTACTTGGTTATGGAGTCTAAAGGAGAGAGGAGAAGAGTGTTCTGCTCTTGATGAAAGATTAAAAAGGAGGGGTGAATGTAGCATTGATGAGGTTAAGAGGGTTCTTCATCTTGGTTTGTTGTGCACTCATCATGACCCTCATGTTAGGCCAAGTATGAGACAGGTTGTGAAAGTGCTAGAAGGAGAGAGTTTAGATATGAGCTTGCTTGACAAAATAAATTCAGCAGCTGGATATGTTGGGAGCTTTGTTAACAGGTTTCACCCCACAATTGAGGATATTTACTCCTCCAACTGCTCTTTCACGACTCTGACAATGAGGGCAGATGAGTAG 2019 0.421 MSTLLISLLLFIISNLTLLLLTSVSCTEFIYNTNFNSTNTLLHGNATIESSILTLTNRSTFSVGRAFYPFKILTKPSNSSSTPLPFSTSFIFSITPFKDLLPGHGFVFILTPSAGTTGVNSAQHLGLFNYTNNGDPNNHVFGVEFDVFDNQEFNDINDNHVGVDINSLSSFASHDAGFWGGGDNDEFEDLKLNDGENYQVWIEYLDSRVNVTMAPAGQKRPQRPLISEIVDLSEVLLDEMYVGFCGATGQLVESHKILAWSFSNTNFSIGDALVTTNLPSFVHSKESILRSTGFIVGIIIGVLFVIGGAVVIFVLFLRRKRSKRKDEEQEEIEDWELEYWPHRVSYEDIYAATKGFSDQHVIGFGGNGKVYKGLLQGVQVAVKRIPCDSEHGMREFLSEISSLGRLKHKNVVPLRGWCKKQRSLILIYDYMDNGSLDKRIFDGDENTIFGWEKRIKVLKDVAHGILYLHEGWEVKVLHRDIKSSNVLLDKGMNARLGDFGLARMHHHGQIAHTSQVIGTVGFMAPELIHTGRASTQTDVFSFGVLILEVVCGRRPNEENRPLVTWLWSLKERGEECSALDERLKRRGECSIDEVKRVLHLGLLCTHHDPHVRPSMRQVVKVLEGESLDMSLLDKINSAAGYVGSFVNRFHPTIEDIYSSNCSFTTLTMRADE* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0942 672 CDD lectin_legume_LecRK_Arcelin_ConA 27 265 IPR001220 GO:0030246
Gso12g0942 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gso12g0942 672 Gene3D Transferase(Phosphotransferase) domain 1 431 636 - -
Gso12g0942 672 Pfam Legume lectin domain 27 266 IPR001220 GO:0030246
Gso12g0942 672 ProSiteProfiles Protein kinase domain profile. 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0942 672 SUPERFAMILY Protein kinase-like (PK-like) 332 623 IPR011009 -
Gso12g0942 672 SMART serkin_6 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0942 672 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 15 629 - -
Gso12g0942 672 Gene3D - 25 275 - -
Gso12g0942 672 CDD TM_EGFR-like 291 325 - -
Gso12g0942 672 CDD STKc_IRAK 362 624 - -
Gso12g0942 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 265 IPR013320 -
Gso12g0942 672 Gene3D Phosphorylase Kinase; domain 1 317 430 - -
Gso12g0942 672 ProSitePatterns Protein kinases ATP-binding region signature. 362 383 IPR017441 GO:0005524
Gso12g0942 672 Coils Coil 318 338 - -
Gso12g0942 672 Pfam Protein kinase domain 357 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0942 672 PANTHER - 15 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0942 Gso-Chr12 11219509 11221898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0942 24 573 Receptor kinase-like Gene Family AT4G04960 59.353 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso12g0942 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0942 - - gmx:100814167 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0942 12 11219509 11221898 Gso6g2397 6 45586674 45589110 GST
Gso12g1737 12 40987380 40989783 Gso12g0942 12 11219509 11221898 PCT
Gso11g3125 11 47149239 47152378 Gso12g0942 12 11219509 11221898 PCT
Gso12g0942 12 11219509 11221898 Gso11g3126 11 47152689 47155021 PCT