Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0941 ATGGGCTGCATATGTTCTAAGGCTTCAGCTGTAGAGGACAGCAAGGAAGCTGTCACTGAGAAATTTCAATCGTATAGCACAAGGCCTTCGGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAGGGTGGGGTGAAAGATGTGTTAATAGTTGGTGGTCATGTGAAAGGTTCATTGATTGACAAGAAGGCCAACGGTTCAGGCCAGTTGTATGGTGATCATGATGCAAAGAAGAAATTAGAGAAGCCGGAATTGACTGTTGTGGATCATATTGGCCCTGGAAGGGTTCCAAAGGCTATTGAAGGAGAGCAAGTTGCAGCTGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCGAATACGTTTGAGAGGTTGCATAAAATTGGGCAAGGAACTTACAGTACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGACAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATTAAATTGGAGGGCTTGATAACGTCACAGATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCGCAGCTGAAATGCTACATGCGGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTCTTAAAGATCGCTGATTTTGGTTTGGCAAGTTTTTATGACCCTCAGCACAATGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCTATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGACGACTATTGGCTTAAATCGCGGTTGTCACATTCCACAGTATTCAGGCCACCACACCATTATAGGCGTTGTGTTGCAGATACATTTAAGGACTACCCATCTACTGCGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGACTGCAGCAGCTGCTCTGGAAAGTGAGTTCTTTATGTCGGAGCCTCTGCCTTGTGACCCATCAAGTTTGCCAAAATATGTTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCGTAAGGCAAGGAGTTGTTGGAGGTAGGGAACAAAAAGTTGCCTCAGGAGTTAGACAAGAAAAAGGACACAGGGCAAATGTCACAGCAAAAGACAATGCTGACCCAGGCTTAGCAGTGCAGCAAGGACACTGTTCCAGCTCAAGGAACCAAAGTGAATTATCAAACCCTCATAGAGGATCGGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAAAAGAAATGAATGATAATTTCTCTGGGCATCTTTATAAGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAAGAAGTTGATGATGTGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTCTCTGAAGATCAGGAGGTTAAACCAGTTCACTCGAACCACAGAAAACCAATTGAAGTAAGAAAATCCGTGGAGTCCACTAATGGATCAGAGTCGAGAAGAAGGCACGATCAAAAACAGATTGTTGATCTCAATCAAATTGAAAGTAGAAGGGTCCCGGCTGAAAAATCAACTCCGGGTGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGAGCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCCAGAATTGACAAGTCAAGAGCAAGAGGTGAGAAAGTTTTTGCACAGCGGAAGTAG 2088 0.4425 MGCICSKASAVEDSKEAVTEKFQSYSTRPSELNVLRLNSTRRVDEGGVKDVLIVGGHVKGSLIDKKANGSGQLYGDHDAKKKLEKPELTVVDHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMTREIHVLRRLDHPNIIKLEGLITSQMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMRQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFYDPQHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKSRLSHSTVFRPPHHYRRCVADTFKDYPSTAVKLIETLLSVEPAHRGTAAAALESEFFMSEPLPCDPSSLPKYVPSKEIDAKLRDEAVRQGVVGGREQKVASGVRQEKGHRANVTAKDNADPGLAVQQGHCSSSRNQSELSNPHRGSVSGILVFPHKQSEKEMNDNFSGHLYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNRVNLSKLSGLVASRTFSEDQEVKPVHSNHRKPIEVRKSVESTNGSESRRRHDQKQIVDLNQIESRRVPAEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVFAQRK* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0941 695 MobiDBLite consensus disorder prediction 487 506 - -
Gso12g0941 695 PANTHER CYCLIN-DEPENDENT KINASE 1 682 - -
Gso12g0941 695 MobiDBLite consensus disorder prediction 582 622 - -
Gso12g0941 695 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0941 695 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Gso12g0941 695 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Gso12g0941 695 MobiDBLite consensus disorder prediction 674 695 - -
Gso12g0941 695 MobiDBLite consensus disorder prediction 462 476 - -
Gso12g0941 695 MobiDBLite consensus disorder prediction 459 508 - -
Gso12g0941 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Gso12g0941 695 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Gso12g0941 695 MobiDBLite consensus disorder prediction 581 646 - -
Gso12g0941 695 PANTHER CELL DIVISION PROTEIN KINASE 1 682 - -
Gso12g0941 695 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0941 695 CDD STKc_CDK9_like 135 419 - -
Gso12g0941 695 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0941 695 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0941 Gso-Chr12 11197302 11204111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0941 127 461 Core Cell Cycle Gene Families AT5G10270 48.000 4.40e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso12g0941 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0941 - - gmx:100814156 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0941 12 11197302 11204111 Gso6g2398 6 45592135 45599006 GST
Gso12g1736 12 40980120 40985696 Gso12g0941 12 11197302 11204111 PCT
Gso11g3127 11 47155471 47160986 Gso12g0941 12 11197302 11204111 PCT
Gso12g0941 12 11197302 11204111 Gso12g1736 12 40980120 40985696 PCT
Gso12g0941 12 11197302 11204111 Gso11g3127 11 47155471 47160986 PCT