Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0926 ATGGCCTTAGATCACTTCGAGGAGAGTGTGCACCAAAAAGGAAATTGGAAATCTTCCAGTGAAATCATTGCAGATTCTGGTAGAAATGCCTCTGGTAGCTTTGACTGCAACATCTGCCTGGAGTGTGTTCAAGATCCAGTGGTGACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATATAAATGGCTTCATTTTCAAAGCACCTCTTTGGATAATGAAGAGCAACAGAAGCCACAATGTCCTGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATACGGCCGCGGCCAAACCACAATACCTTCTAAAGGGAAGCCACATCAAGTAGGGACTGTCATACCACAAAGACCTCATGGTCCCAGAACACTTAACATTAGAAGTGTTTCCCAACCGATTTCTCAAAGTTACCATCCCTATAGTAATCCTTATCATCCTCAACAATTCAACTCGATTCCAAGCGGTTACACCTCACCTATGATTAGAACAAGTGGTTCAATAGACAACACATTTGGAATCTTTGGAGAGATGATATATGCAAGGGTATTTGGTAACCACGTGTCAAACCTCCATACATATGCCAATCTTTCGGGGACCAGTAACCCAAGAATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTTTGCTGCCTAGTTTTGTGTCTGCTCTTATTCTGA 711 0.4191 MALDHFEESVHQKGNWKSSSEIIADSGRNASGSFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDNEEQQKPQCPVCKSEVSQSSLVPLYGRGQTTIPSKGKPHQVGTVIPQRPHGPRTLNIRSVSQPISQSYHPYSNPYHPQQFNSIPSGYTSPMIRTSGSIDNTFGIFGEMIYARVFGNHVSNLHTYANLSGTSNPRMRRHLMQVDKSLSRISCFLLCCLVLCLLLF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0926 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 111 IPR013083 -
Gso12g0926 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso12g0926 236 Pfam RING-type zinc-finger 36 82 IPR027370 -
Gso12g0926 236 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Gso12g0926 236 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Gso12g0926 236 SUPERFAMILY RING/U-box 32 97 - -
Gso12g0926 236 MobiDBLite consensus disorder prediction 104 124 - -
Gso12g0926 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 8 236 - -
Gso12g0926 236 CDD RING-HC_AtRMA_like 34 86 - -
Gso12g0926 236 SMART ring_2 36 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0926 Gso-Chr12 10898328 10901363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0926 23 236 C3H Transcription Factor Family AT4G28270 41.553 8.35e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0926 K10666 - gmx:100807729 468.388