Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0915 ATGGGTGTTCTTCAATCTACACTTCTCTACTTGATCTTAGTACATTCATGCAAGATTGTTGCTTACAAAGACCAAGAGTGGAAAAAAGCCACTGCAACTTATGCCAATGACACAGAGGGGTCTCTTATTACCGAAGGAGCTTGTGGTTATGGAGACCTCCACAGGGCAAGTTATGGGAAACACAGTGCTGGGTTAAGCACCATTTTGTTCAACAGAGGGAGCACATGTGGGGCTTGCTATGAAATCAGGTGTGTTGATCACATCTTGTGGTGTGTGATGGGAAGCCCTTCTGTTGTTGTTACTGTTACAGATTTCTGTGCTCCAAATTATGGGCTTTCTGTTGATTATGGTGGCTGGTGCAATTTTCCAAGAGAACATTTTGAGATGTCACGGGCTGCATTTGCTGAAATTGCCAAGAATAAAGCTGATATAGTGCCGGTTCAGTATAGAAGAGTGAAGTGTGCAAGGAGTGGTGGCATGAGATTCACAATGTGTGGGAGTTCTCACTTCTATCAAGTTCTGATTTCCAATGTTGGTCTGGATGGTGAAGTGTTTGCTGTGAAAGTGAAAGGATCTAGAACAGGATGGATACCAATGGCAAGGAACTGGGGACAAAACTGGCATTGCAATTTCAACTTCCAAAATCAGCCTTTGTCCTTTGAGGTAACCAGCAGTAGTGGAAAGACACTCACATCTTACAATGTAGCACCCGCAAACTGGATGTTTGGACAGACATTTGAAGGAAAACAATTTGAGCATGAGTAG 765 0.4327 MGVLQSTLLYLILVHSCKIVAYKDQEWKKATATYANDTEGSLITEGACGYGDLHRASYGKHSAGLSTILFNRGSTCGACYEIRCVDHILWCVMGSPSVVVTVTDFCAPNYGLSVDYGGWCNFPREHFEMSRAAFAEIAKNKADIVPVQYRRVKCARSGGMRFTMCGSSHFYQVLISNVGLDGEVFAVKVKGSRTGWIPMARNWGQNWHCNFNFQNQPLSFEVTSSSGKTLTSYNVAPANWMFGQTFEGKQFEHE* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0915 254 SUPERFAMILY Barwin-like endoglucanases 12 177 IPR036908 -
Gso12g0915 254 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Gso12g0915 254 Gene3D - 155 248 IPR036749 -
Gso12g0915 254 Pfam Lytic transglycolase 63 149 IPR009009 -
Gso12g0915 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Gso12g0915 254 PANTHER EXPANSIN-A15 3 252 IPR002963 GO:0009664
Gso12g0915 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gso12g0915 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Gso12g0915 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso12g0915 254 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Gso12g0915 254 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Gso12g0915 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Gso12g0915 254 SMART dpbb_1 62 149 IPR007112 -
Gso12g0915 254 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Gso12g0915 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Gso12g0915 254 Gene3D - 12 154 IPR036908 -
Gso12g0915 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Gso12g0915 254 PANTHER EXPANSIN-A20 3 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0915 Gso-Chr12 10626022 10627652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0915 4 251 Expansin Gene Family AT4G38210 62.400 2.39e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0915 - - gmx:100804002 538.495