Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0906 ATGGCAAACAACAGTGGAAAATCCAACAAGGAGGGTGTTGAAGGGACTCAACTCAAGGTGATTGGTGAAAGTGAAGGCCAAGATTGGGAGAAAGAGAAGGGAAAGCGTCTTGATTTGAGCTCAGGGAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCCGTGTCACATAGGCCTCTCAAGAAAATCCGCAGCCCCGAACCCGAAAACCCGAATCAACAACAACAACAACAGCCATCCTCTATGCTGTCTCTTCAACCTCCTTCATCAAGAATAGTGTTTCCTTTTGCTTTTGAAGGCTCTCAACATCCAATGCCATTCCCACACCCTTTTGGAACCACAAACTTGCCTCTTTTTCGTCCACCTCTTCATCCAACTCAACAAATGATATCTTTTTTGCCCTCACAGAACATGGGGTATCCACCATTCCTAGCCCCAGAATCCACCATGCCACACGAACACCAACAACATCATCATCAACAGCTTCTTCAGTATTGGAGTGATGCACTGAATTTGAGTCCAAGAGGGAGGATGATGATGATGAATAGGACTGAAGGGAGACAAATGTTAAGGCCCCAAGCACAGCCTTTGAATGCTACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAGATTCGTCTTCCTCGCAATCGAACTCGCCTTTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCTATGGCTTATGATCGAGAGGCCTTTAAGCTTAGAGGGGAAAATGCAAAGCTCAATTTCCCTGAACTCTTTCTCAACAAGGATAAAGCAGAACAATCCACAACTGCTCCTGCATCTTCTTCTAATGAAGGTTCAACATCGAGCCAGAACACAAAGCAACCTGAACCAATACCAGAAGGGACGACTAACACTGAGAGTGAGGACATGCCACCAACAGAGACATTTGCAGTAGAAAACGCTGTAACCGAAGAAGGAATTTCACAGCCTCAGGAATTGGTTTGGGGTGAATGGTTCAATGCAATTCCTGCAGGTTGGGGACCTGGAAGTCCTGTGTGGGATGACTTGGACCCCAACAACAATCTTCTTTTGCATTCACAACTTCCCTTTGTGAATCCAAATCAGCAAGAGTTCCATGATGCTGGTGCTTCTTCTCGGACACAACAAGAAGATAACAGCACAGAACCAGGTTCTTCTTCTCCCTCTTGTTCCATGAGGCCCTTCTTCTGA 1221 0.4652 MANNSGKSNKEGVEGTQLKVIGESEGQDWEKEKGKRLDLSSGRRQWKPVFDDASVSHRPLKKIRSPEPENPNQQQQQQPSSMLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGTTNLPLFRPPLHPTQQMISFLPSQNMGYPPFLAPESTMPHEHQQHHHQQLLQYWSDALNLSPRGRMMMMNRTEGRQMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEQSTTAPASSSNEGSTSSQNTKQPEPIPEGTTNTESEDMPPTETFAVENAVTEEGISQPQELVWGEWFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPNQQEFHDAGASSRTQQEDNSTEPGSSSPSCSMRPFF* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0906 406 MobiDBLite consensus disorder prediction 268 308 - -
Gso12g0906 406 MobiDBLite consensus disorder prediction 364 406 - -
Gso12g0906 406 MobiDBLite consensus disorder prediction 50 65 - -
Gso12g0906 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 406 - -
Gso12g0906 406 CDD AP2 201 261 IPR001471 GO:0003700|GO:0006355
Gso12g0906 406 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Gso12g0906 406 PRINTS Ethylene responsive element binding protein signature 225 241 IPR001471 GO:0003700|GO:0006355
Gso12g0906 406 Pfam AP2 domain 203 251 IPR001471 GO:0003700|GO:0006355
Gso12g0906 406 ProSiteProfiles AP2/ERF domain profile. 202 259 IPR001471 GO:0003700|GO:0006355
Gso12g0906 406 Gene3D AP2/ERF domain 202 260 IPR036955 GO:0003700|GO:0006355
Gso12g0906 406 SUPERFAMILY DNA-binding domain 202 260 IPR016177 GO:0003677
Gso12g0906 406 MobiDBLite consensus disorder prediction 268 309 - -
Gso12g0906 406 MobiDBLite consensus disorder prediction 67 86 - -
Gso12g0906 406 MobiDBLite consensus disorder prediction 24 42 - -
Gso12g0906 406 MobiDBLite consensus disorder prediction 1 86 - -
Gso12g0906 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 406 - -
Gso12g0906 406 SMART rav1_2 202 265 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0906 Gso-Chr12 10516176 10518598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0906 14 352 AP2-EREBP Transcription Factor Family AT2G20880 42.817 3.04e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g0906 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0906 - - gmx:100801882 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0906 12 10516176 10518598 Gso12g0906 12 10516176 10518598 ECH