Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0888 ATGGGTTGGAAGAGATCTGGTTTGGAGTGGGAGAGAGTGAAGATCTATGGACAAGTTCTATTGGGATTTCTGTATATCTGCACAATTCAGACTTCAAGTGCAGTCACTGATCCCACTGATGTTGCTGCAATTAATAGCTTATATATTGCATTGCGATCCCCTGTTCTGCCTGGGTGGGTTGCTAGTGGTGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTCTGTGTAATGGATCATTCATACAAAAAATAGTTCTAAACGGTGCAAATTTGGGAGGAGAACTGGGAGATAAACTGTCAACTTTTGTTTCAATCTCAGTAATTGATCTAAGCAGCAACAACATTGGAGGAAATATTCCATCCAGTTTGCCAGTTACCTTGAGAAACTTTTTTCTTGCAGCCAACCAGTTCACTGGAAGTATTCCGACCTCTTTATCCACTTTGACTGGACTGACAGACATGTCTCTTAATGAGAACTTTTTAACTGGAGAAATACCAGATGCTTTTCAGTCACTTACACAATTGATCAATCTAGATTTATCTCATAATAATTTGAGTGGGGAATTGCCTCCTTCTATGGATAATTTGTTGGCTCTGACCACCCTACGCTTACAGAACAATCAACTTTCTGGGACACTTGATGTTTTGCAAGACCTTCCTCTGAAAGATTTGAATGTTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTAAGCATCCCTGCCTTCAGACAAGCTGGAAACCCATTCAATGTTAATGGTACTACAACTCCTGCTTCTTCACCTCGCTCCCCAGCAATAGCACCACCAGGAACTCCTATTTCTGGGGCACCACCCGGAACTCCTGTTTCTGGGACACCGCCATCTTCTGGTCGTGTACCTACTAAACAGGCTGATGGACCAACTGCAGTAAATGAATCACATACTGGGAAATCCAAAAAATCCACAAAAAGGGTGGTTTGGATATCAATTGCTAGTGTGTTGGGATTCATTATTTTGTTACTAGGATTTATTCTCTTTATTCCAAGGTGTAGCAGAAGAGAACGGGATGACAGAAGGTCCAAGCAACATCAAATTGGTGCATATGGAGGTGAAAGACAAAATGCTAGGGATTACGAGGCTTTAGTCCAACCGCCTAGTCAAATGGAAAAAGTACCAGTAGGGGATGTTCCAAAGCCAAAAGAGGGTCATCAAGCAGAGAGCAGGAGAACTTGGGTTACTCCAAATCCACAGGGTGAGCAAGAGAAGGATGTGCATAGAAATAGAATGGCAACAATACCAAAGCCAGTAGAGCATGAGATAGATATGAGTACTCTAGAAGTATATTCAATGCCTCCTCCTCCCCCTCCACCTCCACCCCCACCTCCCCCTCCCCCTCCCCCGCCTCCACCCCCGCCTCCACCTCCACCTCCTCCTCCTACTGAGAAGGTGATTATTGAGCCAGCCTCATCCCGCAGTGGGACTAATGTCAATCCTGTGAATCCATCCATTAGAAGTTCAGTTCCTCCTCCCACTTTTGCAAAATTTTTCGCCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGTTGGGTAATGTGTATAGAGCAGAGCTTCCTAATGGAAAGTTGCTTGCTGTAAAGAAACTGGACAAGAGAGCCTCTGCACACCAGAAGGATGAAGAATTTATTGAATTGATAAATAATATTGACAAAATACGGCATGCAAATGTTGTTGAGCTTGTTGGATACTGTTCAGAGCATGATCAAAGGCTTCTAATCTATGAGTACTGCAGTAATGGATCACTGTATGATGCACTCCACTCAGATGATGACTTCAAAACAAGACTCTCATGGAATTCTCGTATTCGGATCTCACTTGGGGCAGCTAGAGCCTTAGAATATCTGCATGAGCAATGTCAGCCACCTGTAGTACATAGAAATTTGAAGTCTGCCAATATTCTCCTTGATGATGATCTATCCGTGCGGGTCTCTGACTGTGGTCTAGCTCCATTAATAGCTTCGGGATCAGTCAGTCAGCTCTCGGGGAACCTGTTAACTGCCTATGGCTATGGAGCTCCTGAATTTGAGTCTGGAATTTACACATACCAAAGTGATGTGTACAGCTTTGGAGTGATCATGTTAGAACTTTTGACTGGCCGTCAATCGCACGATAGGGCACGAGCACGAGGGGAGCAATTTCTGGTCAGATGGGCAGTTCCCCAACTTCATGATATCGATGCATTATCAAGGATGGTTGATCCTTCATTAAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACATTATCTCTAGATGCCTTCAGTCTGAGCCAGAATTTAGGCCAGCAATGTCCGAGGTCGTCCTATACTTACTAAATATGATGAGGAAGGAGTCTCAGCAAAGTGAATCAAATGAAAAATGA 2445 0.436 MGWKRSGLEWERVKIYGQVLLGFLYICTIQTSSAVTDPTDVAAINSLYIALRSPVLPGWVASGGDPCGEGWQGILCNGSFIQKIVLNGANLGGELGDKLSTFVSISVIDLSSNNIGGNIPSSLPVTLRNFFLAANQFTGSIPTSLSTLTGLTDMSLNENFLTGEIPDAFQSLTQLINLDLSHNNLSGELPPSMDNLLALTTLRLQNNQLSGTLDVLQDLPLKDLNVENNQFAGPIPPKLLSIPAFRQAGNPFNVNGTTTPASSPRSPAIAPPGTPISGAPPGTPVSGTPPSSGRVPTKQADGPTAVNESHTGKSKKSTKRVVWISIASVLGFIILLLGFILFIPRCSRRERDDRRSKQHQIGAYGGERQNARDYEALVQPPSQMEKVPVGDVPKPKEGHQAESRRTWVTPNPQGEQEKDVHRNRMATIPKPVEHEIDMSTLEVYSMPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTEKVIIEPASSRSGTNVNPVNPSIRSSVPPPTFAKFFAIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKLLAVKKLDKRASAHQKDEEFIELINNIDKIRHANVVELVGYCSEHDQRLLIYEYCSNGSLYDALHSDDDFKTRLSWNSRIRISLGAARALEYLHEQCQPPVVHRNLKSANILLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSHDRARARGEQFLVRWAVPQLHDIDALSRMVDPSLNGNYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMMRKESQQSESNEK* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0888 814 MobiDBLite consensus disorder prediction 288 311 - -
Gso12g0888 814 SUPERFAMILY L domain-like 57 242 - -
Gso12g0888 814 MobiDBLite consensus disorder prediction 251 317 - -
Gso12g0888 814 SUPERFAMILY Protein kinase-like (PK-like) 501 798 IPR011009 -
Gso12g0888 814 MobiDBLite consensus disorder prediction 442 481 - -
Gso12g0888 814 Pfam Protein tyrosine and serine/threonine kinase 527 796 IPR001245 GO:0004672|GO:0006468
Gso12g0888 814 MobiDBLite consensus disorder prediction 444 479 - -
Gso12g0888 814 MobiDBLite consensus disorder prediction 265 287 - -
Gso12g0888 814 MobiDBLite consensus disorder prediction 349 424 - -
Gso12g0888 814 Gene3D Phosphorylase Kinase; domain 1 498 601 - -
Gso12g0888 814 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 813 - -
Gso12g0888 814 ProSiteProfiles Protein kinase domain profile. 524 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0888 814 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Gso12g0888 814 Gene3D Ribonuclease Inhibitor 39 257 IPR032675 -
Gso12g0888 814 Gene3D Transferase(Phosphotransferase) domain 1 602 814 - -
Gso12g0888 814 PANTHER OS01G0253100 PROTEIN 25 813 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0888 Gso-Chr12 9968131 9975798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0888 32 809 Strubbelig Receptor Gene Family AT4G03390 59.449 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gso12g0888 PK_Tyr_Ser-Thr 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0888 - - ahf:112737625 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0888 12 9968131 9975798 Gso12g0888 12 9968131 9975798 ECH
Gso12g0888 12 9968131 9975798 Gso6g2436 6 46052354 46059935 GST
Gso12g1710 12 40681416 40688255 Gso12g0888 12 9968131 9975798 PCT
Gso11g3155 11 47416688 47423423 Gso12g0888 12 9968131 9975798 PCT
Gso12g0888 12 9968131 9975798 Gso12g1710 12 40681416 40688255 PCT
Gso12g0888 12 9968131 9975798 Gso11g3155 11 47416688 47423423 PCT