Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0876 ATTGGGTTTAGCAGTAGTGGAGGTCTAGTGGCATATTGCGATGCCAAACCAGAATATGTTAATCATGAAAGTAAAAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAATATGAAAAGCAACTCCTATGATATTCATGTTGTTTCACCACGTAACTATTTTGCATTCACTCCATTGTTACCAAGTGTCACGTGTGGCACAGTGGAAGCAAGGAGCGTCGTTGAACCGATTCGCAGCATCACCAGGAAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTATAAGATCGATAACAAGAACAACAAAGTTTATTGCCGTGCTAGTAAAGACAAAAAGTTGGGTGGCCAAGAAGACTTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAAGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATTCGTCATTCAGTGGTTGACCTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTTGTAGTAGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTACTTGAGGATATGGCGAAGCTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAGTTTGCTGAACAAAAGTTTGCTAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATTACTGCCAAAGAAAGGGCAAGTGGTCAAGTTGTTTCTATACCTCATGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAGTAGTTGAATTTATGAAGCAGCTTGGCCAGGTTAACAGGCGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTAGGTGATTGTGCTACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTAAAGAATTTAAAGACGTTGTTGGCGACATTATTGAGAGATACCCTCAAGTAGACATTTATTTAAAGAAGAACCAAATGAGAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAGAGCAATATTATAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTCTATCTTGCAGACTGTTTCAACCGCATGGAGGAGTGTGAGAAGTATCCAGAAGGCCCTCTTAGGTTCAGGGGAGTTGGACGCCATCGGTTCCGTCCCTTCAGGTACAGGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCACAGCACCCAATGGCTCTGGTATTCGGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATATTTGGCAGGGACTCAAGTAAAATCTAA 1644 0.4234 IGFSSSGGLVAYCDAKPEYVNHESKKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRKSGVNIHFSEAECYKIDNKNNKVYCRASKDKKLGGQEDFSIDYDYLVIAMGGRSNTFNTPGVQEHAHFLKEVDEALKIRHSVVDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVLEDMAKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEQKFARDGIDVRLGSMVVKVGENEITAKERASGQVVSIPHGMVVWSTGIGARPEVVEFMKQLGQVNRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADKNNSGKLDLKEFKDVVGDIIERYPQVDIYLKKNQMRDMASLLKKSQESNIIVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMEECEKYPEGPLRFRGVGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFIFGRDSSKI* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0876 547 PANTHER NAD(P)H DEHYDROGENASE B2 45 547 - -
Gso12g0876 547 ProSitePatterns EF-hand calcium-binding domain. 362 374 IPR018247 -
Gso12g0876 547 Pfam Pyridine nucleotide-disulphide oxidoreductase 27 352 IPR023753 GO:0016491
Gso12g0876 547 PRINTS FAD-dependent pyridine nucleotide reductase signature 29 48 - -
Gso12g0876 547 PRINTS FAD-dependent pyridine nucleotide reductase signature 132 150 - -
Gso12g0876 547 PRINTS FAD-dependent pyridine nucleotide reductase signature 193 211 - -
Gso12g0876 547 PRINTS FAD-dependent pyridine nucleotide reductase signature 321 343 - -
Gso12g0876 547 SUPERFAMILY FAD/NAD(P)-binding domain 26 245 IPR036188 -
Gso12g0876 547 PANTHER NADH DEHYDROGENASE 45 547 IPR045024 GO:0003954|GO:0006116
Gso12g0876 547 Gene3D - 392 547 - -
Gso12g0876 547 Gene3D - 18 384 - -
Gso12g0876 547 SUPERFAMILY EF-hand 343 433 IPR011992 -
Gso12g0876 547 SMART efh_1 353 381 IPR002048 GO:0005509
Gso12g0876 547 SUPERFAMILY FAD/NAD(P)-binding domain 186 346 IPR036188 -
Gso12g0876 547 ProSiteProfiles EF-hand calcium-binding domain profile. 349 384 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0876 Gso-Chr12 9819574 9824591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0876 5 547 Chloroplast and Mitochondria Gene Families AT4G21490 69.022 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0876 K03885 - gmx:100790773 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0876 12 9819574 9824591 Gso12g0876 12 9819574 9824591 ECH
Gso12g0876 12 9819574 9824591 Gso6g2449 6 46179209 46184762 GST