Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0872 ATGGGAAGAGTTCCTTGCTGTGACAAGAATGGACTCAAGAAGGGTCCATGGACACCAGAGGAAGATCTTAAACTCACCAACTACATTCAGTTTCATGGACCAGGCAATTGGCGATCCCTCCCTAAAAATGCTGGCCTAAAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTTAGACCCGATATAAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATATCATCATTCAGTTGCACAGTATCTTGGGTAACAAATGGTCAGCTATAGCATCAAGGTTACCAGGAAGAACCGACAACGAAATAAAAAACTATTGGAACACCCACATTAGGAAGAGGCTACTTCGAATGGGAATTGACCCAGTCACACACACCCCACGCCTTGACCTACTTGACATGTCCTCTATTTTAAGGTCAGTGTTCGGGAACCCCTCCCTTTTGAACATGCAAGGCTTATTACGTGCCCAAGCTTTGATGAACCAAGGGTTACTAAAGCTGGCTTCCACTGCCTCTCTTCTATCAACAATCAACAATGATGAGAACCCAAATTTGGCTTCACACAATTATGTACAAAACCAAGTTACCACCCCACCATCATTAGACTCAGCACAGTTTCAATTTCAAATGCCTACTACTCAGACAAACAATGTGGAAGTCTTCTCGGGCACCGTGGCAAACTTGAGCTGTTCAAGTTCTCCTTCGGGTGATGAGAACCTTGTTTTGCAACAAAACCAAGTTGGTTTGTCAGGGAACCATGATGCTTTGGTGCACTCTCTGAACAATGCAAACCAAAACATGGAGTGTGATTCGGTTCTGCCTACGCCTGTGTCAAGTCCAAACCGGTTGAATTCATCATCCAACTATGTAAGAAGTGGCACGGACGAAGAGAGGGATAGCTTTTTTAGTGACTTGTTCGAGTTTGAAATTCCAGAGAGTTTGGATGACATTGCTGATATTTTTTTGTAA 972 0.4372 MGRVPCCDKNGLKKGPWTPEEDLKLTNYIQFHGPGNWRSLPKNAGLKRCGKSCRLRWTNYLRPDIKRGRFSLEEEDIIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDMSSILRSVFGNPSLLNMQGLLRAQALMNQGLLKLASTASLLSTINNDENPNLASHNYVQNQVTTPPSLDSAQFQFQMPTTQTNNVEVFSGTVANLSCSSSPSGDENLVLQQNQVGLSGNHDALVHSLNNANQNMECDSVLPTPVSSPNRLNSSSNYVRSGTDEERDSFFSDLFEFEIPESLDDIADIFL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0872 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso12g0872 323 CDD SANT 69 112 IPR001005 -
Gso12g0872 323 Gene3D - 69 116 - -
Gso12g0872 323 CDD SANT 16 61 IPR001005 -
Gso12g0872 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso12g0872 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso12g0872 323 Gene3D - 13 66 - -
Gso12g0872 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso12g0872 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso12g0872 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso12g0872 323 SMART sant 66 114 IPR001005 -
Gso12g0872 323 SMART sant 13 63 IPR001005 -
Gso12g0872 323 PANTHER TRANSCRIPTION FACTOR MYB41 1 316 - -
Gso12g0872 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 316 - -
Gso12g0872 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0872 Gso-Chr12 9740142 9741481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0872 1 187 MYB Transcription Factor Family AT4G21440 68.528 2.57e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0872 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0872 K09422 - gmx:100787592 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0872 12 9740142 9741481 Gso12g0872 12 9740142 9741481 ECH
Gso12g0872 12 9740142 9741481 Gso6g2460 6 46259456 46261255 GST
Gso12g1689 12 40524972 40526553 Gso12g0872 12 9740142 9741481 PCT
Gso12g0872 12 9740142 9741481 Gso12g1689 12 40524972 40526553 PCT