Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0868 ATGGAGTTTGACCTTGAAAACCCTTTAGAAAATCTTCACTCTGATGATGTCTCTTACCTCTTCCTCATTGAATCTGACCACACCCCATCACAGAATCACTCTCAGACTCTCAAAGCTAGAGATCTTGACATCTCTGTCAGAAGAGAACTCATTTCCTTAATCTCACAGTTGTCCTGTGCTTTGGATCCGGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTGACCAACCAAGGGATTCTGCAACCAAAGCCATGGGCCCTGAGGCTCGTTGCTGTCTCTTGCATTTCTCTAACTGTCAAGATGATGGGAACTGAATACCCTGCCACTGATATCCAGGCCCTTTTGAATCAAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAGCACTCATCTTGGGAGCATTACAATGGAGAATGAGATCGATCACCCCATTCTCTTTCGTAGCTTTCTTTATTGCCTTGATGGGGCTCAAAGAGTCGCCAATGGGGCAGGTTCTGAAAAACCGTGCCTCTGAAATCATATTCAAGTCACAAAGAGAGATAAGGCTTTGGGGATTCAAGCCATCTATAATTGCTGCATCTGCTCTTCTTTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCGTTCTTCTTAAAAGCAATATCCGATTCTTCATATGTAAATAAAGAAATCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAAGAGTACTCTTCTGCGTTGAATGGGGTTTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAAAAACCAACGGAATCACCGTTGCTAATGCTGCTGATTCTCCTCTTGGGGATCTCAAAAGAAGGAAAATCACTGGCTGTGGTGGAAACAATCCAACAATCCTCAATTCTTGGATTCAACCATGCGAGAGAGAGAGTGAAAAGTAA 975 0.4277 MEFDLENPLENLHSDDVSYLFLIESDHTPSQNHSQTLKARDLDISVRRELISLISQLSCALDPVLSYLAINYLDRFLTNQGILQPKPWALRLVAVSCISLTVKMMGTEYPATDIQALLNQSDGGIIFETQTIQRMEALILGALQWRMRSITPFSFVAFFIALMGLKESPMGQVLKNRASEIIFKSQREIRLWGFKPSIIAASALLCASHELFPFQYPFFLKAISDSSYVNKEIVEQCYKVIQDIAIEEEYSSALNGVSRSDTPINVLDHHFLSSESEKTNGITVANAADSPLGDLKRRKITGCGGNNPTILNSWIQPCERESEK* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0868 324 PANTHER CYCLINS 5 282 IPR039361 -
Gso12g0868 324 CDD CYCLIN 47 140 IPR013763 -
Gso12g0868 324 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 282 - -
Gso12g0868 324 SMART cyclin_7 48 141 IPR013763 -
Gso12g0868 324 Gene3D - 20 239 - -
Gso12g0868 324 SMART Cyclin_C_2 150 263 IPR004367 -
Gso12g0868 324 Pfam Cyclin, C-terminal domain 150 249 IPR004367 -
Gso12g0868 324 SUPERFAMILY Cyclin-like 132 246 IPR036915 -
Gso12g0868 324 SUPERFAMILY Cyclin-like 13 147 IPR036915 -
Gso12g0868 324 Pfam Cyclin, N-terminal domain 21 147 IPR006671 -
Gso12g0868 324 Gene3D - 30 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0868 Gso-Chr12 9663463 9666207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0868 1 301 Core Cell Cycle Gene Families AT4G03270 43.711 4.35e-73 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0868 K18812 - gmx:100783875 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0868 12 9663463 9666207 Gso12g0868 12 9663463 9666207 ECH
Gso12g0868 12 9663463 9666207 Gso6g2463 6 46300764 46303297 GST
Gso12g1686 12 40490228 40492842 Gso12g0868 12 9663463 9666207 PCT
Gso11g3182 11 47598616 47601247 Gso12g0868 12 9663463 9666207 PCT
Gso12g0868 12 9663463 9666207 Gso12g1686 12 40490228 40492842 PCT
Gso12g0868 12 9663463 9666207 Gso11g3182 11 47598616 47601247 PCT