Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0859 ATGATCACAAAGATGGTGAGAACCCCATCTTGTGACAAAAGTGGAATGAGGAAAGGAACTTGGACTCCGGAGGAAGATATGAAGTTAATTGCTTATGTCACTAGATATGGTTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAAACCTCAAAAGAGGGAACTTCACTCAAGAAGAGGAAGAATGCATCATTAGAATGCACAAAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCTGGAAGAACAGATAACGAAATAAAAAATCATTGGCACACCACACTCAAGAAAAGATCTCAACAAAACACAGTCACAATTGAAGAAACTAGAGTCTCAAAATCAAAGAATAACGAATCAGTTCCCAATAAGGGGGTAACTGTTACTCTTCTGGCTACTTCTTCCCAGATGTCAGATAATTCATCAATATCCCCAGTTTCATCCTCCTGCAGCGAGTTTTCCTCCATAACTTCGTATCATTCCACCGCTGCTAGCTGTATGGAGAATTTGGTGTTTGAAGATGATGACTTCGGTTTTCTTGATTCATACAATGAAAGCTTCTGGACACAACTAAATCTGGATGACATTTCCAACAATGCACCATGTGAAATTTTTTCAGAAGATTCCAATGGCTCTTTTCAAAGTACAGATGCTACCCAGATCCATGATTCTTGTGCAAAGTCTCCTACAACTAGCGAAAGTAATATTGTTGTGGATAATGACTTTGTCGACTTTCTGGATGCATACAAAGACGCAACGGTTGATAACTTTTGGTCACAGACATATGTAGCTGACATGTCCCACGTTCCAACTGAACTACTTGTTCACTCCGTGGCAGAATCTGAATGTTTTACTCCAATATATGATGATTTGTGGGGTCAAAGTTATTTGTACCATGAAAATCATCATGGTTTATTCCGATGA 984 0.3984 MITKMVRTPSCDKSGMRKGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTQEEEECIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSQQNTVTIEETRVSKSKNNESVPNKGVTVTLLATSSQMSDNSSISPVSSSCSEFSSITSYHSTAASCMENLVFEDDDFGFLDSYNESFWTQLNLDDISNNAPCEIFSEDSNGSFQSTDATQIHDSCAKSPTTSESNIVVDNDFVDFLDAYKDATVDNFWSQTYVADMSHVPTELLVHSVAESECFTPIYDDLWGQSYLYHENHHGLFR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0859 327 CDD SANT 73 116 IPR001005 -
Gso12g0859 327 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 5 253 - -
Gso12g0859 327 CDD SANT 20 65 IPR001005 -
Gso12g0859 327 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Gso12g0859 327 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Gso12g0859 327 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gso12g0859 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 253 - -
Gso12g0859 327 Gene3D - 18 70 - -
Gso12g0859 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Gso12g0859 327 Gene3D - 73 145 - -
Gso12g0859 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Gso12g0859 327 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Gso12g0859 327 SMART sant 17 67 IPR001005 -
Gso12g0859 327 SMART sant 70 118 IPR001005 -
Gso12g0859 327 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0859 Gso-Chr12 9499839 9501361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0859 5 184 MYB Transcription Factor Family AT2G31180 53.333 8.04e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0859 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0859 K09422 - gmx:102666009 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0859 12 9499839 9501361 Gso6g2467 6 46360728 46362211 GST