Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0858 ATGATGGTGAGAACCCCGAGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGACAGCAGAGGAAGACAAGAAGTTGGTTGATTACATTACCAGATATGGCCACTGGAATTGGCGACTACTCCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGTAGACTTAGGTGGCTGAATTACCTAAGGCCAAACCTAAAAAGAGGGAACTACACTGAAGAAGAGGAGGAAACTATTATCAAGCTACACCGACGTCTGGGTAACAGATGGTCTACCATAGCTGCACGGATGCCAGGAAGAACAGACAACGAAATAAAGAACCATTGGCACACCAACCTCAAGAAGAGATCTCAACAGCATAACTCAGTAGCCACAGAATCTCAGATCTCAAACTCAAATGACCAATCTCCAACTGAACCAACTGAAGATACTGCTTTCCAAAACTTTAACAGTGCCACTCAAGACTGTTCCCCACTTTCCCAGCATTCATCATCATCCACAAGCACAGAGTGTACCACAGTGGCCAGCACCGAAAATCTATTGCTGCTGGAAGATGAATTTGCCTTTTGGGATGCAGACACAGATCTTGTGAGTGGAAATTTCTGGCTAGAACCGTATATGCTTGATATTTCCTACCTCCCTGCTAGTGAACCCGAGTACTTTAGCCAAGTGTTTGATGTAGAACTTTGGAGCCATGATACTTAA 705 0.4468 MMVRTPSCDKNGLKKGTWTAEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTEEEEETIIKLHRRLGNRWSTIAARMPGRTDNEIKNHWHTNLKKRSQQHNSVATESQISNSNDQSPTEPTEDTAFQNFNSATQDCSPLSQHSSSSTSTECTTVASTENLLLLEDEFAFWDADTDLVSGNFWLEPYMLDISYLPASEPEYFSQVFDVELWSHDT* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0858 234 MobiDBLite consensus disorder prediction 112 145 - -
Gso12g0858 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso12g0858 234 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso12g0858 234 Gene3D - 14 67 - -
Gso12g0858 234 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 2 211 - -
Gso12g0858 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gso12g0858 234 Gene3D - 70 142 - -
Gso12g0858 234 SMART sant 67 115 IPR001005 -
Gso12g0858 234 SMART sant 14 64 IPR001005 -
Gso12g0858 234 MobiDBLite consensus disorder prediction 116 145 - -
Gso12g0858 234 CDD SANT 81 113 IPR001005 -
Gso12g0858 234 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso12g0858 234 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso12g0858 234 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso12g0858 234 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gso12g0858 234 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 211 - -
Gso12g0858 234 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0858 Gso-Chr12 9480127 9482665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0858 2 198 MYB Transcription Factor Family AT2G31180 49.010 2.12e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0858 Myb_DNA-binding 3.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0858 K09422 - gmx:100778518 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0858 12 9480127 9482665 Gso6g2468 6 46369939 46372287 GST
Gso12g0858 12 9480127 9482665 Gso12g1684 12 40461396 40463887 PCT
Gso12g0858 12 9480127 9482665 Gso11g3184 11 47625901 47633007 PCT