Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0854 ATGAGGAACAACAAGCCACAGTTATGGCTTTCTCTTTCTCTCATCATCACATGCTTCTCGTTCCACACTTCCCTTGCTGCTTTGACCACCATCTCAGCAAACCAATCTCTCTCTGGGGATGAAACTCTTGTCTCCCAACATGGAAACTTCGAATTGGGTTTCTTCAACACAGGTAACAACTCCAATAAATTCTTCATAGGCATGTGGTACAAAAAGATATCTCAAAGAACCTATGTTTGGGTAGCAAATAGAGACCAACCAGTTTCTGATAAGAATTCTGCCAAGTTAACAATATTGGAGGGTAATTTAGTGCTTTTAGACCAATCCCAAAATCTAGTTTGGTCAACCAATTTGAGTTCTCCTAGCTCAGGTTCTGCTGTAGCTGTGCTTCTAGATACTGGGAATCTTATATTAAGCAATAGGGCTAATGCATCAGTATCTGATGCTATGTGGCAGAGTTTTGATCACCCCACAGATACATGGCTTCCTGGTGGTAAGATAAAATTAGATAAAAAAACAAAGAAGCCACAATATCTAACGTCATGGAAGAATAGGGAAGATCCTGCACCGGGTTTGTTCTCTCTTGAACTAGACCCTGCAGGAAGCAATGCATATTTGATTCTTTGGAACAAATCTGAACAGTATTGGACAAGTGGTGCTTGGAATGGACAAATTTTCAGCTTGGTTCCTGAGATGAGGCTGAACTACATCTACAATTTCACCTTTCAGTCCAATGAGAACGAGAGCTACTTCACCTACTCCATGTATAACTCCTCTATTATCTCGCGTTTCGTGATGGATGGCTCGGGGCAGATCAAGCAACTTTCGTGGCTGGAGAATGCTCAGCAATGGAATTTGTTTTGGTCTCAGCCTAGGCAACAATGTGAGGTCTATGCCTTCTGTGGTGGATTTGGGAGCTGCACTGAGAATGCCATGCCATATTGTAATTGTTTGAATGGTTATGAGCCAAAGTCACAATCTGATTGGAATCTTACGGATTACTCAGGAGGGTGTGTGAAGAAGACCAAGTTTCAATGTGAGAATCCAAATTCCTCTGACAAGGAAAAGGACAGGTTCCTTCCAATTCTCAACATGAAGTTGCCCAATCATTCGCAATCCATAGGAGCCGGGACTGTTGGGGAATGTGAAGCAAAGTGCTTAAGTAACTGTTCTTGTACTGCATATGCTCATGACAATAGTGGTTGTTCAATTTGGCATGGTGATCTCTTGAATCTGCAGCAGCTTACTCAAGATGATAATAGTGGCCAGACTTTGTTCCTCAGGCTTGCAGCCTCTGAGTTTGATGATTCTAATAGCAATAAGGGGACAGTCATTGGTGCTGTTGCTGGAGCTGTTGGTGGTGTAGTGGTTCTTCTAATACTTTTTGTGTTTGTGATGCTGCGGCGCAGAAAGAGGCATGTTGGGACCAGAACATCGGTGGAGGGCTCATTGATGGCATTTGGCTACAGGGATTTGCAAAATGCCACAAAGAATTTCTCGGAGAAACTTGGAGGAGGGGGCTTTGGTTCTGTCTTCAAAGGAACATTGCCTGATTCGAGTGTCGTGGCAGTGAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAGCAGTTCAGGACAGAAGTGAGTACAATTGGGACAGTCCAGCATGTCAACCTTGTAAGGCTTCGCGGATTCTGTTCTGAAGGTACTAAGAAACTGCTGGTTTATGATTACATGCCAAATGGTTCATTGGAGTCCAAAATGTTTCATGAAGATAGCTCCAAGGTGTTGTTGGATTGGAAAGTGAGATACCAAATTGCTCTTGGAACAGCAAGGGGATTGACTTATCTCCATGAGAAGTGTAGAGATTGCATCATACACTGTGATGTGAAGCCAGAAAACATTCTGCTAGATGCTGATTTTATTCCAAAGGTGGCAGATTTTGGTCTTGCAAAGCTTGTTGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGGACAAGAGGCTATCTTGCTCCTGAGTGGATTTCAGGTGTGGCTATCACTGCCAAAGCTGATGTCTACAGCTATGGAATGATGCTTTTTGAGTTTGTGTCGGGTAGGAGGAACTCCGAGGCATCGGAAGATGGCCAAGTGAGATTCTTTCCTACCATTGCTGCAAACATGATGCACCAAGGAGGGAATGTGCTAAGCCTTTTGGACCCTAGGTTGGAGGAAAATGCTGACATTGAAGAGGTCACTAGAGTCATCAAAGTAGCTTCATGGTGTGTCCAAGATGATGAATCTCATAGGCCTTCCATGGGTCAGGTGGTTCAAATCCTTGAAGGGTTCTTGGATGTGACTTTGCCTCCAATTCCAAGGACCCTCCAAGCCTTTGTTGACAACCATGAGAACGTTGTTTTCTTCACCGACTCCAGCTCCACACAGACTTCACAGGTAAAGAGTAATGCCTCAGCTGCTTCCTCTCAAGCCAAAAGCAACATCTCATCATCCAATAGTAGCACCTAG 2490 0.4406 MRNNKPQLWLSLSLIITCFSFHTSLAALTTISANQSLSGDETLVSQHGNFELGFFNTGNNSNKFFIGMWYKKISQRTYVWVANRDQPVSDKNSAKLTILEGNLVLLDQSQNLVWSTNLSSPSSGSAVAVLLDTGNLILSNRANASVSDAMWQSFDHPTDTWLPGGKIKLDKKTKKPQYLTSWKNREDPAPGLFSLELDPAGSNAYLILWNKSEQYWTSGAWNGQIFSLVPEMRLNYIYNFTFQSNENESYFTYSMYNSSIISRFVMDGSGQIKQLSWLENAQQWNLFWSQPRQQCEVYAFCGGFGSCTENAMPYCNCLNGYEPKSQSDWNLTDYSGGCVKKTKFQCENPNSSDKEKDRFLPILNMKLPNHSQSIGAGTVGECEAKCLSNCSCTAYAHDNSGCSIWHGDLLNLQQLTQDDNSGQTLFLRLAASEFDDSNSNKGTVIGAVAGAVGGVVVLLILFVFVMLRRRKRHVGTRTSVEGSLMAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLPDSSVVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKKLLVYDYMPNGSLESKMFHEDSSKVLLDWKVRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFIPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEASEDGQVRFFPTIAANMMHQGGNVLSLLDPRLEENADIEEVTRVIKVASWCVQDDESHRPSMGQVVQILEGFLDVTLPPIPRTLQAFVDNHENVVFFTDSSSTQTSQVKSNASAASSQAKSNISSSNSST* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0854 829 SUPERFAMILY Protein kinase-like (PK-like) 482 804 IPR011009 -
Gso12g0854 829 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Gso12g0854 829 SMART ntp_6 354 429 IPR003609 -
Gso12g0854 829 SMART blect_4 34 157 IPR001480 -
Gso12g0854 829 PIRSF SRK 3 823 IPR024171 GO:0004674
Gso12g0854 829 ProSiteProfiles Protein kinase domain profile. 497 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0854 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Gso12g0854 829 Gene3D Transferase(Phosphotransferase) domain 1 572 775 - -
Gso12g0854 829 ProSiteProfiles PAN/Apple domain profile. 346 430 IPR003609 -
Gso12g0854 829 SMART serkin_6 497 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0854 829 Gene3D - 24 154 IPR036426 -
Gso12g0854 829 Gene3D Phosphorylase Kinase; domain 1 463 571 - -
Gso12g0854 829 CDD STKc_IRAK 503 771 - -
Gso12g0854 829 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Gso12g0854 829 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 798 - -
Gso12g0854 829 MobiDBLite consensus disorder prediction 803 829 - -
Gso12g0854 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 222 IPR036426 -
Gso12g0854 829 CDD PAN_AP_plant 351 430 - -
Gso12g0854 829 Pfam PAN-like domain 353 411 IPR003609 -
Gso12g0854 829 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 7 798 - -
Gso12g0854 829 CDD B_lectin 34 157 IPR001480 -
Gso12g0854 829 Pfam D-mannose binding lectin 77 183 IPR001480 -
Gso12g0854 829 ProSitePatterns Protein kinases ATP-binding region signature. 503 526 IPR017441 GO:0005524
Gso12g0854 829 Pfam Protein kinase domain 500 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0854 Gso-Chr12 9376474 9379485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0854 480 778 Receptor kinase-like Gene Family AT5G20050 44.904 3.81e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso12g0854 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0854 - - gmx:100305421 1588.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0854 12 9376474 9379485 Gso6g2471 6 46407918 46410930 GST
Gso12g1679 12 40428528 40431613 Gso12g0854 12 9376474 9379485 PCT
Gso12g0854 12 9376474 9379485 Gso12g1679 12 40428528 40431613 PCT