Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0851 ATGAAGAAGTGCGAACTGTGTAAAGTTCCGGCGAGGATCTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGGACTGCGACGCTAAGGTTCACAGCGCCAACTTCTTGGTCGCGAGGCACGTGCGAACCCTACTCTGCCGCACGTGTCGTTCTCCCACGCCCTGGAAGGCCTCCGGCGCCTCACTCGCCCACGCCGCCTCCGTCTGCGACCGCTGCGCCGCCGCGGAAGAGACGGAAGAGAGCGAAGCCGGCAATGACGACGAACCAGACACCGAGGACGACGACGATGTCGACAACCAGGTCGTGCCGTGGTCCTCCACGCCGCCGCCGCCGCCGCCGTCGAGCTCCTCCGGCAGCGAATGCTCGGAGTGCAAAAACAACGTTGCTTCTTTTTCCGCCTCGGAACAGGAAACGACAACATCCTCGTTGAAACGACAGCGCGAGGACGACGACGATGCTTCTTCCGATCCTGATCCCAGTTTGTCGCTTGAAATCAGGGTGTTGAGAAGGGTTGGGCGTCTCAACGGAGGTTGCGTGTGA 540 0.613 MKKCELCKVPARIFCESDQASLCWDCDAKVHSANFLVARHVRTLLCRTCRSPTPWKASGASLAHAASVCDRCAAAEETEESEAGNDDEPDTEDDDDVDNQVVPWSSTPPPPPPSSSSGSECSECKNNVASFSASEQETTTSSLKRQREDDDDASSDPDPSLSLEIRVLRRVGRLNGGCV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0851 179 MobiDBLite consensus disorder prediction 79 99 - -
Gso12g0851 179 MobiDBLite consensus disorder prediction 117 140 - -
Gso12g0851 179 SMART bboxneu5 1 45 IPR000315 GO:0008270
Gso12g0851 179 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 158 - -
Gso12g0851 179 MobiDBLite consensus disorder prediction 76 163 - -
Gso12g0851 179 CDD Bbox1_BBX-like 3 45 - -
Gso12g0851 179 Pfam B-box zinc finger 2 41 IPR000315 GO:0008270
Gso12g0851 179 PANTHER - 1 158 - -
Gso12g0851 179 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0851 Gso-Chr12 9319001 9320164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0851 2 94 C2C2-CO-like Transcription Factor Family AT5G54470 57.447 5.89e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g0851 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0851 - - gmx:100789532 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0851 12 9319001 9320164 Gso6g2473 6 46427418 46428491 GST
Gso12g1677 12 40402357 40403801 Gso12g0851 12 9319001 9320164 PCT
Gso11g3189 11 47695274 47696792 Gso12g0851 12 9319001 9320164 PCT
Gso12g0851 12 9319001 9320164 Gso12g1677 12 40402357 40403801 PCT
Gso12g0851 12 9319001 9320164 Gso11g3189 11 47695274 47696792 PCT