Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0850 ATGGTAAACACCAAGGGAGAGACCAGAAGGATAATTATCCTTAACTGGTGTTCTAGTCACATGTTGTCTATCTTCATCTTATACTCATTCTTTTTCACTTTTAGTTTCAAGCATTGCTCAGCAACAGATACTATAAGTATAACCATTAACAACTTCTTGCAAGATGGGGGAGGGGATACTCTAGTTTCAAAAGGTGAAAATTTTGAGCTAGGATTTTTCACTCCTAATGGAAGCTCTAGTGGGAAAAGATATTTGGGAATATGGTACTACAAGTTGACTCCACTAACAGTTGTGTGGGTTGCTAACCGAGACAAACCACTTCTAGATTCTTGTGGTGCTTTTGGCATAGCAGAAGATGGAAATCTAAAGGTTTTAGACAAAAGTGGGAAATTCTACTGGGGCACAAACCTTGAAGGATCACATTCACAACACAGAATAGTTATGCTAATGGACAATGGGAACCTTGTTGTTAGTGATGAAGTTGAAGACCAAGGAAACCATCAAGTGAAGATTTTGTGGCAGAGTTTTGCTAATCCAACAGACACATTTCTCCCAGGCATGAAAATGGATGACAATTTAGCATTAACTTCATGGAGAAGTTATGAAGATCCTGCACCAGGGAACTTCTCTTTTGAGCATGATCAAGGGGAGAACCAGTATATAATATGGAAAAGGTCCATAAGGTATTGGAAAAGCAGCGTTTCAGGTAAGTTTGTTGGAGCTGGTGAGATTTCTACAGCAATATCTTACTTTTTGTCTAATTTCACCTTGAAAGTGTCCCCAAACAACACTGTTCCCTTCCTCACTTCAGCACTTTATACTGACACAAGGTTGGTCATGACTCACTGGGGTCAACTCAAGTACATGAAGATGGATTCGGAGAAAATGTGGTTGTTGGTTTGGGGTGAGCCAAGAGATAGATGCAGTGTGTTCAATGCCTGTGGAAACTTTGGAAGCTGCAATAGCAAGTATGATTCCATGTGCAAGTGCTTGCCAGGGTTCAAGCCTAATTCCATTGAGAGTTGGAATGCCGGAGACTTTTCGGGTGGATGCAGCAGGAAAACAAATGTGTGCAGTGGGGATGCCAAGGGTGACACATTTTTGAGCTTGAAAATGATGAAAGTAGGGAACCCTGATGCTCAATTTAATGCCAAGGATGAAGAGGAATGCATGTCAGAGTGCCTCAACAATTGCCAGTGTTATGCTTATTCCTATGAAGACACTGAAAAGGGAAGGTTGGGTGATAGTGGGGATGTAGTTTGCTGGATTTGGTCTGAGGACTTGAACAATCTTGAAGAAGAGTATGAGGATGGGTGTGACCTGCATGTTCGTGTCGCAGTTTCTGATATAGAATCCACTGGGAGAAATTGTGGGACCTGTGGTACAAACTTCATTCCATATCCCCTTAGCACAGGACCAAGTTGTGGTGATCCCATGTACTTCAGTTTTCACTGCAATATCTCCACTGGTGAGCTTGACTTTGAGACTCCTGGGGGCACATATCAAGTGATAAGCATAAACCCAGAAGCACAAAAATTCTTGATCCACAGAAAGAATGTACTTAACTGTGATCAAAGTTCAAGGGATAAGTTTCTGCCTCTCAACAAGTCGTTTCCGTTTCATCTTACCAGTAATTGCTATGCTGATCCAAGCATTTTTAGTTCTAATGCTCCCATGAAACATGGAGTAGAAATAGAATTGAGTTGGGAGCAACCATTAGAGCCTATTTGCTCTTCATTGTTGGACTGCAAGGAGTGGCCAAATTCAACTTGCAACACTTCCAGTGATGGCAAGAAGAGGTGCCTTTGCAACACAAACTTTCTTTGGGATGGATTGAAGTTAAATTGTACTCTAGAAGGAAATCATAGCTATCAACCAGAAAGGCAACTGTCCTTACCTAAGATCATTGTAATTACTTTAACAACTGTGATTGGCTTGATTCTTCTCTCAACTACTAGCACATGTGTTTACTTGAGGAAAAGGAGACAGGCCAAACCACAAGATAGCAGGGGATATGTTCAGAAAAACTCAGGGATTAACTTGTATGACAGTGAGAGATATGTAAGAGACTTGATTGAATCCAGTAGGTTCAAAGAAGATGATGCACAGGCCATAGATATTCCATATTTCCATTTGGAAAGCATACTTGATGCTACTAATAACTTTGCAAATACAAACAAGCTTGGACAAGGAGGGTTTGGTCCTGTCTACAAGGGAAAGTTCCCTGGAGGGCAAGAAATAGCAGTGAAGAGACTTTCAAGTTGTTCTGGACAAGGTTTAGAGGAGTTTAAAAATGAGGTTGTGTTGATTGCCAAGCTTCAACATAGAAACCTAGTTAGACTTTTGGGTTACTGTGTGGAAGGAGATGAAAAGATGCTAGTATATGAATATATGCCAAATAGAAGCTTGGATGCTTTCATTTTTGACCGGAAGCTGTGTGTTCTATTAGACTGGGATGTGCGCTTCAAGATTATTTTGGGGATTGCTCGAGGGCTCCTTTATCTACATGAAGATTCTAGGTTGAGGATTATTCATAGGGACTTGAAAACAAGCAACATTCTACTAGATGAAGAGAAGAATCCTAAAATCTCAGACTTTGGCTTAGCCAGGATATTTGGAGGAAAAGAGACAGTAGCCAACACAGAAAGAGTGGTTGGAACTTATGGGTATATGTCTCCAGAATATGCACTTGATGGACATTTTTCAGTCAAGTCTGATGTCTTTAGCTTTGGTGTTGTTGTACTTGAGATTATTAGTGGAAAAAGGAACACAGGATTTTATCAAGCAGATCATGAATTGAGTCTTCTAGGATATGCATGGCTTTTGTGGAAAGAAGGAAAGGCGTTGGAGTTCATGGACCAGACACTATGTCAAACATGCAATGCAGATGAATGCTTGAAATGTGTGATTGTGGGGCTCTTGTGCTTACAAGAAGATCCAAATGAACGCCCCACAATGTCAAATGTAGTTTTCATGCTTGGTAGTGAATTCAACACTCTTCCAAGTCCTAAGGAACCAGCCTTTGTTATCAGGAGATGCCCTTCGAGTAGAGCATCTACTTCAAGTAAATTAGAAACCTTTTCACGTAATGAATTGACAGTCACTATAGAACATGGCAGGTAG 3123 0.407 MVNTKGETRRIIILNWCSSHMLSIFILYSFFFTFSFKHCSATDTISITINNFLQDGGGDTLVSKGENFELGFFTPNGSSSGKRYLGIWYYKLTPLTVVWVANRDKPLLDSCGAFGIAEDGNLKVLDKSGKFYWGTNLEGSHSQHRIVMLMDNGNLVVSDEVEDQGNHQVKILWQSFANPTDTFLPGMKMDDNLALTSWRSYEDPAPGNFSFEHDQGENQYIIWKRSIRYWKSSVSGKFVGAGEISTAISYFLSNFTLKVSPNNTVPFLTSALYTDTRLVMTHWGQLKYMKMDSEKMWLLVWGEPRDRCSVFNACGNFGSCNSKYDSMCKCLPGFKPNSIESWNAGDFSGGCSRKTNVCSGDAKGDTFLSLKMMKVGNPDAQFNAKDEEECMSECLNNCQCYAYSYEDTEKGRLGDSGDVVCWIWSEDLNNLEEEYEDGCDLHVRVAVSDIESTGRNCGTCGTNFIPYPLSTGPSCGDPMYFSFHCNISTGELDFETPGGTYQVISINPEAQKFLIHRKNVLNCDQSSRDKFLPLNKSFPFHLTSNCYADPSIFSSNAPMKHGVEIELSWEQPLEPICSSLLDCKEWPNSTCNTSSDGKKRCLCNTNFLWDGLKLNCTLEGNHSYQPERQLSLPKIIVITLTTVIGLILLSTTSTCVYLRKRRQAKPQDSRGYVQKNSGINLYDSERYVRDLIESSRFKEDDAQAIDIPYFHLESILDATNNFANTNKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDAFIFDRKLCVLLDWDVRFKIILGIARGLLYLHEDSRLRIIHRDLKTSNILLDEEKNPKISDFGLARIFGGKETVANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQADHELSLLGYAWLLWKEGKALEFMDQTLCQTCNADECLKCVIVGLLCLQEDPNERPTMSNVVFMLGSEFNTLPSPKEPAFVIRRCPSSRASTSSKLETFSRNELTVTIEHGR* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0850 1040 Pfam D-mannose binding lectin 96 193 IPR001480 -
Gso12g0850 1040 Pfam PAN-like domain 361 430 IPR003609 -
Gso12g0850 1040 SMART ntp_6 362 445 IPR003609 -
Gso12g0850 1040 ProSiteProfiles EGF-like domain profile. 304 340 IPR000742 -
Gso12g0850 1040 ProSiteProfiles PAN/Apple domain profile. 358 439 IPR003609 -
Gso12g0850 1040 SUPERFAMILY Protein kinase-like (PK-like) 704 993 IPR011009 -
Gso12g0850 1040 Pfam S-locus glycoprotein domain 236 337 IPR000858 GO:0048544
Gso12g0850 1040 SUPERFAMILY alpha-D-mannose-specific plant lectins 97 203 IPR036426 -
Gso12g0850 1040 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 1037 - -
Gso12g0850 1040 ProSiteProfiles Protein kinase domain profile. 722 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0850 1040 Gene3D - 41 178 IPR036426 -
Gso12g0850 1040 CDD STKc_IRAK 728 993 - -
Gso12g0850 1040 SMART serkin_6 722 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0850 1040 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Gso12g0850 1040 CDD B_lectin 56 179 IPR001480 -
Gso12g0850 1040 ProSiteProfiles Bulb-type lectin domain profile. 46 170 IPR001480 -
Gso12g0850 1040 Pfam Protein tyrosine and serine/threonine kinase 725 991 IPR001245 GO:0004672|GO:0006468
Gso12g0850 1040 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 37 1037 - -
Gso12g0850 1040 SMART blect_4 52 179 IPR001480 -
Gso12g0850 1040 CDD PAN_AP_plant 358 446 - -
Gso12g0850 1040 Gene3D Transferase(Phosphotransferase) domain 1 798 1000 - -
Gso12g0850 1040 Gene3D Phosphorylase Kinase; domain 1 685 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0850 Gso-Chr12 9294865 9300317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0850 715 1011 Receptor kinase-like Gene Family AT4G23230 60.606 5.60e-122 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g0850 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0850 - - gmx:100775297 2115.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0850 12 9294865 9300317 Gso12g0850 12 9294865 9300317 ECH
Gso12g1674 12 40356729 40361083 Gso12g0850 12 9294865 9300317 PCT
Gso11g3190 11 47703412 47708818 Gso12g0850 12 9294865 9300317 PCT
Gso12g0850 12 9294865 9300317 Gso12g1671 12 40315441 40323266 PCT