Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0844 ATGCACATGTTAGTGAAAAACCACAATAAGGGGGATGGATCTAAGTCCCTGGCCGATACACTGGCGAAATGGAAAGAATATAATGCCTGGCTGGAGTCTAACAATGAAGCTGAGAAGCCGGTTAGGAAGGTCCCTGCCAAGGGATCAAAGAAAGGATGTATGAAAGGCAAAGGAGGACCTGAGAACTCGCGCTGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGAAAATGGGTTGCTGAAATCCGAGAGCCAAACAGAGGAAGTAGGCTCTGGTTGGGTACTTTTCCCACTGCCATTAGCGCTGCTCTTGCTTATGATGAAGCAGCGATGGCAATGTATGGTTTCTGTGCACGCCTCAACTTTCCCAATGTTCAAGTTTCAACTTTTTCCGAGGAACCGTCTAGAAATTCTCCAGCTGCTGCTTACCAGTCAAGAAATTCTCCATCTGCTAAAGAATCCGGTTCTGCGTTGGTGATATTAGAGAGGTCTGAGTGCATGATGTTGTGGAACAATTCTGGTGGAGATGCAGCAGAGGATGATGGCATGGAAGACCTTTCCTTATCCTTAAGTGTGAAACATGAGGAAGGGGAGGATGAATCAGGGACCAGTTCTTCCTATCTTTCATTGTCTTGA 636 0.4638 MHMLVKNHNKGDGSKSLADTLAKWKEYNAWLESNNEAEKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAAMAMYGFCARLNFPNVQVSTFSEEPSRNSPAAAYQSRNSPSAKESGSALVILERSECMMLWNNSGGDAAEDDGMEDLSLSLSVKHEEGEDESGTSSSYLSLS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0844 211 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Gso12g0844 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 204 - -
Gso12g0844 211 MobiDBLite consensus disorder prediction 38 65 - -
Gso12g0844 211 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Gso12g0844 211 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Gso12g0844 211 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Gso12g0844 211 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso12g0844 211 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Gso12g0844 211 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Gso12g0844 211 MobiDBLite consensus disorder prediction 172 211 - -
Gso12g0844 211 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Gso12g0844 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 204 - -
Gso12g0844 211 MobiDBLite consensus disorder prediction 130 151 - -
Gso12g0844 211 MobiDBLite consensus disorder prediction 186 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0844 Gso-Chr12 9201590 9203442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0844 4 123 AP2-EREBP Transcription Factor Family AT2G40350 58.871 6.49e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso12g0844 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0844 - - gmx:100788110 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0844 12 9201590 9203442 Gso6g2476 6 46482679 46484832 GST
Gso12g1668 12 40276622 40278450 Gso12g0844 12 9201590 9203442 PCT
Gso11g3194 11 47744766 47746564 Gso12g0844 12 9201590 9203442 PCT
Gso12g0844 12 9201590 9203442 Gso12g1668 12 40276622 40278450 PCT
Gso12g0844 12 9201590 9203442 Gso11g3194 11 47744766 47746564 PCT