Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0829 ATGTCTGAATTTGACACGAACATCCCAACTGCTTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCCGGGACAAAAGAGTATGTTCATGTTCGTGTACAACAGCGCAACGGAAGGAAAAGCCTAACAACTGTTCAAGGATTAAAGAAAGAGTATAGCTATAGCAAGATACTCAAGGACCTGAAGAAAGAATTCTGCTGTAATGGTACTGTTGTCCAAGACCCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGAAAGAATGTTTCTACTTTCCTTGTGCAGGCTGGCATAGTAAAGAAGGAACACATCAAGCTTCATGGTTTTTAA 342 0.4269 MSEFDTNIPTAFDPFAEANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKLHGF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0829 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 7 113 IPR005874 GO:0003743
Gso12g0829 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Gso12g0829 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Gso12g0829 113 Gene3D - 2 113 - -
Gso12g0829 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Gso12g0829 113 SUPERFAMILY eIF1-like 7 113 IPR036877 GO:0003743|GO:0006413
Gso12g0829 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Gso12g0829 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Gso12g0829 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0829 Gso-Chr12 8864231 8866880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0829 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 89.381 1.24e-75 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0829 K03113 - gmx:100784390 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0829 12 8864231 8866880 Gso12g0829 12 8864231 8866880 ECH
Gso12g0829 12 8864231 8866880 Gso6g2489 6 46651849 46655131 GST