Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0825 ATGGCGACTCTTGATTCCGACGTGCCTATGGTTCCCGCCGGCGAGCCCTCGAGCAGCGCCGGTCCTTCTTCCAAGAAGCCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCTATCTGCCGGAACCACATCATGGATCTCTGCATCGAGTGCCAAGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTGGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATCAGTCGATGGCTCAAGACTCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAG 351 0.5413 MATLDSDVPMVPAGEPSSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0825 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Gso12g0825 116 PANTHER RING BOX 1 116 - -
Gso12g0825 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Gso12g0825 116 SUPERFAMILY RING/U-box 28 113 - -
Gso12g0825 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Gso12g0825 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Gso12g0825 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 116 IPR013083 -
Gso12g0825 116 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0825 Gso-Chr12 8785643 8788640 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0825 K03868 - gmx:100789570 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0825 12 8785643 8788640 Gso6g2494 6 46696918 46700035 GST
Gso12g1643 12 40035819 40038124 Gso12g0825 12 8785643 8788640 PCT
Gso11g3224 11 47971845 47974145 Gso12g0825 12 8785643 8788640 PCT
Gso12g0825 12 8785643 8788640 Gso12g1643 12 40035819 40038124 PCT
Gso12g0825 12 8785643 8788640 Gso11g3224 11 47971845 47974145 PCT