Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0822 ATGCAAGCCGGTATTATGATGATTCCGGCGAGAAACATGCCTTCGATGATAGCAAGAAACAACAACGTTGTAGGGTTTTTTGGATCATCTGCACTTTTCACTCTTGCCCAGCCGAACCTGATGGACGCGTTGGAGATGGGTCAGAACACTTCCGAGAGTGAGGTTCCTCGAATCCTTGAAGACGAGTTCGACAGTGCCACCAAGTCCGGTAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAGCACGAGCGGCATGAGAATACAAATCTCAGAACCGAAAACGAGAAGCTTCGAGCAGATAATATGAGGTATAGGGAGGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAACGCAAGGCTAAGAGAAGAGATTGATCGCATCTCAGCAATTGCTGCAAAGTATGTAGGGAAGCCAGTGGTGAACTATTCAAATATTTCTCCTTCTCTCCCTCCTCGTCCGTTAGAACTAGGGGTTGGTGGTGCTGGTTTTGGAGGCCAACCAGGGATTGGTGTGGACATGTATGGAGCTGGGGATCTTCTTAGGTCAATTAGTGGACCCACTGAAGCTGATAAGCCAATAATCATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGGATGGCACAAATGGGTGAGCCTCTTTGGTTAACTACCCTTGATGGCACATCCACTATGCTCAATGAGGATGAGTACATTAGGTCTTTTCCTCGAGGGATTGGTCCAAAACCTAGTGGCTTCAAATGTGAAGCTTCAAGAGAAACTGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTTCTATCAACAGGGGTGGCTGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAACTACAACTACCTACACCACTTGTGCCAACTCGCGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGCAGATGGGACTTGGGCAGTTGTGGATGTTTCTTTGGATAATTTGCGCCCAGGTCCTTCAGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGTGAAAGACTCGCTAGTGCCATGGCAACAAACATTCCCACTGTAGATGTTGGCGTGATAACAAACCAAGACGGGAGAAAGAGCATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTCTCTGGGACCGGTGCTGATGATGTAAGGGTTATGACCAGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATAGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCACCTAAACGAGTCTTTGACTTCCTCCGTGACGAAAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGAAGAGACACAGGAAACTGTGTATCTCTACTTCGAGTAAATAGTGCAAATTCGAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCAATTCAACAGGCTCTTTTGTCATTTATGCTCCGGTGGACATTGTTGCAATGAATGTGGTTCTAAATGGTGGAGACCCAGATTACGTGGCACTTCTTCCTTCAGGGTTTGCTATTCTCCCTGATGGAACCACATCGCATAATGGAAGTGGTGGCATTGGCGAAACTGGCCCTAGTGGTTCTCTCTTAACCGTTGCGTTTCAAATATTGGTGGATTCTGTTCCAACCGCGAAGCTTTCTCTTGGATCTGTGGCCACTGTGAACAATCTCATTGCATGCACTGTTGAGAGAATCAAGGCTTCTTTGTCTGGTGAACCTGCTTGA 2286 0.4659 MQAGIMMIPARNMPSMIARNNNVVGFFGSSALFTLAQPNLMDALEMGQNTSESEVPRILEDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTNLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPGPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTNSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHNGSGGIGETGPSGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEPA* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0822 761 CDD START_ArGLABRA2_like 275 499 - -
Gso12g0822 761 Pfam START domain 281 500 IPR002913 GO:0008289
Gso12g0822 761 SUPERFAMILY Homeodomain-like 77 146 IPR009057 -
Gso12g0822 761 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Gso12g0822 761 SMART START_1 280 500 IPR002913 GO:0008289
Gso12g0822 761 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 43 758 - -
Gso12g0822 761 MobiDBLite consensus disorder prediction 65 97 - -
Gso12g0822 761 Gene3D - 327 497 IPR023393 -
Gso12g0822 761 SUPERFAMILY Bet v1-like 271 502 - -
Gso12g0822 761 SUPERFAMILY Bet v1-like 520 753 - -
Gso12g0822 761 SMART HOX_1 87 150 IPR001356 GO:0003677
Gso12g0822 761 MobiDBLite consensus disorder prediction 65 87 - -
Gso12g0822 761 CDD homeodomain 89 147 IPR001356 GO:0003677
Gso12g0822 761 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Gso12g0822 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 43 758 IPR042160 -
Gso12g0822 761 Coils Coil 140 172 - -
Gso12g0822 761 Gene3D - 74 163 - -
Gso12g0822 761 Pfam Homeodomain 89 144 IPR001356 GO:0003677
Gso12g0822 761 ProSiteProfiles START domain profile. 271 503 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0822 Gso-Chr12 8727081 8734901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0822 58 761 Homeobox Transcription Factor Family AT1G05230 80.141 0.0 1168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso12g0822 START 4.9e-60 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0822 K09338 - gmx:100782260 1512.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0822 12 8727081 8734901 Gso12g0822 12 8727081 8734901 ECH
Gso12g0822 12 8727081 8734901 Gso6g2495 6 46724713 46733005 GST
Gso12g1642 12 40003738 40010981 Gso12g0822 12 8727081 8734901 PCT
Gso11g3225 11 48001690 48008845 Gso12g0822 12 8727081 8734901 PCT
Gso12g0822 12 8727081 8734901 Gso12g1642 12 40003738 40010981 PCT
Gso12g0822 12 8727081 8734901 Gso11g3225 11 48001690 48008845 PCT